RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 C2orf80Q0P641 193 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 NAE1Q13564 534 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 LPIN1Q14693 890 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 LDLRAP1Q5SW96 308 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 TPGS2Q68CL5 300 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 RTL4Q6ZR62 310 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 RNF44Q7L0R7 432 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 WFIKKN2Q8TEU8 576 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 RAD51AP1Q96B01 352 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 HMCESQ96FZ2 354 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 HEPHQ9BQS7 1158 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 MINDY3Q9H8M7 445 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 TMEM59LQ9UK28 342 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 DNM1LO00429 736 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 IDH3BO43837 385 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 CFHP08603 1231 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 ITPKAP23677 461 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 SDC2P34741 201 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 OMPP47874 163 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 SRP54P61011 504 aaKnown RBP11.61□□□□□ -0.55
COL9A1-202ENST00000357250 VARS2Q5ST30 1063 aaKnown RBP11.61□□□□□ -0.55
COL9A1-202ENST00000357250 PERM1Q5SV97 790 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 SPRYD7Q5W111 196 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 CDH24Q86UP0 819 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 SERPINA9Q86WD7 417 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 SLC34A3Q8N130 599 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 SLAIN1Q8ND83 568 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 FAM81AQ8TBF8 368 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 GIPC3Q8TF64 312 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 BRI3BPQ8WY22 251 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 RAB11FIP5Q9BXF6 653 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 ALS2Q96Q42 1657 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 PI15O43692 258 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 GMFBP60983 142 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 ERVK-8P63133 956 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 ADGRE1Q14246 886 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 SH3D19Q5HYK7 790 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 RALGPS1Q5JS13 557 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 DCST1Q5T197 706 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 RPTNQ6XPR3 784 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 CACUL1Q86Y37 369 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 C10orf82Q8WW14 230 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 HTATIP2Q9BUP3 242 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 IGFLR1Q9H665 355 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 PTTG2Q9NZH5 202 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 ZNF282Q9UDV7 671 aaPredicted RBP11.61□□□□□ -0.55
COL9A1-202ENST00000357250 POMPQ9Y244 141 aa11.61□□□□□ -0.55
COL9A1-202ENST00000357250 CICQ96RK0 1608 aaPredicted RBP11.61□□□□□ -0.55
COL9A1-202ENST00000357250 RAP2AP10114 183 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 COL6A1P12109 1028 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 LAMP2P13473 410 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 CMPK1P30085 196 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 HNF4AP41235 474 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 PRR5P85299 388 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 RALGDSQ12967 914 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 FAM43BQ6ZT52 329 aaPredicted RBP11.6□□□□□ -0.55
COL9A1-202ENST00000357250 CHST9Q7L1S5 443 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 RGL4Q8IZJ4 473 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 SPATA22Q8NHS9 363 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 SLC13A3Q8WWT9 602 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 ZNF516Q92618 1163 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 MFSD1Q9H3U5 465 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 TAS2R1Q9NYW7 299 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 DNAJB9Q9UBS3 223 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 TIMM22Q9Y584 194 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 PEX16Q9Y5Y5 336 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 GNAZP19086 355 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 IMPDH1P20839 514 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 HSPA7P48741 367 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 CCT3P49368 545 aaKnown RBP11.6□□□□□ -0.55
COL9A1-202ENST00000357250 ZNF132P52740 706 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 LSM3P62310 102 aaKnown RBP11.6□□□□□ -0.55
COL9A1-202ENST00000357250 FOXM1Q08050 763 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 CHIT1Q13231 466 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 PLET1Q6UQ28 207 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 CYP4X1Q8N118 509 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 CBR4Q8N4T8 237 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 RNASE11Q8TAA1 199 aaKnown RBP11.6□□□□□ -0.55
COL9A1-202ENST00000357250 NODALQ96S42 347 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 SLC45A1Q9Y2W3 748 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 NUP98P52948 1817 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 MYBPHLA2RUH7 354 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 LOC110117498-PIK3R3F6TDL0 507 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 SSNA1O43805 119 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 TMEM63AO94886 807 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 CAPN1P07384 714 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 SP100P23497 879 aaPredicted RBP11.6□□□□□ -0.55
COL9A1-202ENST00000357250 ALDH4A1P30038 563 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 SLC7A1P30825 629 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 PIK3CBP42338 1070 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 RPS14P62263 151 aaKnown RBP11.6□□□□□ -0.55
COL9A1-202ENST00000357250 PLEKHO2Q8TD55 490 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 MCMBPQ9BTE3 642 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 IMP3Q9NV31 184 aaKnown RBP11.6□□□□□ -0.55
COL9A1-202ENST00000357250 MRPS7Q9Y2R9 242 aaKnown RBP11.6□□□□□ -0.55
COL9A1-202ENST00000357250 ZFP37Q9Y6Q3 630 aaPredicted RBP11.6□□□□□ -0.55
COL9A1-202ENST00000357250 FAM159BA6NKW6 160 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 CASKO14936 926 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 TLL1O43897 1013 aa11.6□□□□□ -0.55
COL9A1-202ENST00000357250 TCEAL5Q5H9L2 206 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms