RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 LRATO95237 230 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 NDST3O95803 873 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SERPINB9P50453 376 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PLTPP55058 493 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SLC7A5Q01650 507 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 KCTD19Q17RG1 926 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SPDYCQ5MJ68 293 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ACAD10Q6JQN1 1059 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 TLDC1Q6P9B6 456 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ABHD12BQ7Z5M8 362 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ADGRD2Q7Z7M1 963 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ULK2Q8IYT8 1036 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 NKAPQ8N5F7 415 aaKnown RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PCDH19Q8TAB3 1148 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ZFPM2Q8WW38 1151 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 TMCO6Q96DC7 493 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF641Q96N77 438 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SLC6A18Q96N87 628 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 RBBP8Q99708 897 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ELL3Q9HB65 397 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 COL20A1Q9P218 1284 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 TRIM33Q9UPN9 1127 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PRRC2BQ5JSZ5 2229 aaKnown RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 CYP4B1P13584 511 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ENO3P13929 434 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 MC4RP32245 332 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PPP1R26Q5T8A7 1209 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 DENND1BQ6P3S1 775 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 LANCL3Q6ZV70 420 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SNX20Q7Z614 316 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 BPHLQ86WA6 291 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PKNOX2Q96KN3 472 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ASB16Q96NS5 453 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SPATA5L1Q9BVQ7 753 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SLC4A5Q9BY07 1137 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 ABCG8Q9H221 673 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 REV1Q9UBZ9 1251 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SIGLEC1Q9BZZ2 1709 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 A0A1W2PPW3 197 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PLSCR5A0PG75 271 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 TOR1BO14657 336 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 MMEP08473 750 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 MAXP61244 160 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 NFKB2Q00653 900 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PDIA2Q13087 525 aaKnown RBP8.29□□□□□ -1.08
HMGB1-203ENST00000341423 MPP3Q13368 585 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 PGM2L1Q6PCE3 622 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 LCA5Q86VQ0 697 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM25Q86YD3 366 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 DPP10Q8N608 796 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SMRP1Q8NCR6 262 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 MVB12BQ9H7P6 319 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 RIMKLBQ9ULI2 386 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 SAR1BQ9Y6B6 198 aa8.29□□□□□ -1.08
HMGB1-203ENST00000341423 TCRBV5S4A2TA0A5A2 114 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF840PA6NDX5 716 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 HACD1B0YJ81 288 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 SLC30A4O14863 429 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 SEC14L5O43304 696 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 SUPT7LO94864 414 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 TPBGLP0DKB5 382 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 CLUP10909 449 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 VSX2P58304 361 aaPredicted RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 VSNL1P62760 191 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 GTF2BQ00403 316 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 RBL2Q08999 1139 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 PTPRCAPQ14761 206 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 FAM69BQ5VUD6 431 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 EGFLAMQ63HQ2 1017 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 UNC5DQ6UXZ4 953 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 METTL16Q86W50 562 aaKnown RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM171Q8WVE6 324 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 SPDL1Q96EA4 605 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 ITM2CQ9NQX7 267 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM98Q9Y2Y6 226 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 USH1CQ9Y6N9 552 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 NCOR1O75376 2440 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 CASP8AP2Q9UKL3 1982 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 A0A1B0GTH6 734 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 ANKRD63C9JTQ0 380 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 BTN3A1O00481 513 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 CD3EAPO15446 510 aaKnown RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 SCGB2A1O75556 95 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 CYP17A1P05093 508 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 GDF1P27539 372 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 CD151P48509 253 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 NHLH1Q02575 133 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 C1QBPQ07021 282 aaKnown RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 GRIK2Q13002 908 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 CBX3Q13185 183 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 MAPRE2Q15555 327 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 NT5DC1Q5TFE4 455 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 KLHL17Q6TDP4 642 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 UBE2R2Q712K3 238 aaPredicted RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 MILR1Q7Z6M3 343 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 YTHDF3Q7Z739 585 aaKnown RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF598Q86UK7 904 aaKnown RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 SLC22A16Q86VW1 577 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 METTL27Q8N6F8 245 aaPredicted RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 OR6N1Q8NGY5 312 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms