RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 DNALI1O14645 258 aaPredicted RBP18.81■□□□□ 0.6
SYNE4-202ENST00000340477 NDC80O14777 642 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 CD3EAPO15446 510 aaKnown RBP18.81■□□□□ 0.6
SYNE4-202ENST00000340477 NMBRP28336 390 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 RBMS1P29558 406 aaKnown RBP18.81■□□□□ 0.6
SYNE4-202ENST00000340477 LSSP48449 732 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 PDX1P52945 283 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 DHX34Q14147 1143 aaKnown RBP18.81■□□□□ 0.6
SYNE4-202ENST00000340477 SYTL3Q4VX76 610 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 FOXR1Q6PIV2 292 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 FAM83HQ6ZRV2 1179 aaPredicted RBP18.81■□□□□ 0.6
SYNE4-202ENST00000340477 TMEM26Q6ZUK4 368 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 USP53Q70EK8 1073 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 HOOK3Q86VS8 718 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 CFAP206Q8IYR0 622 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 NAT14Q8WUY8 206 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 TMEM159Q96B96 161 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 SERPINB12Q96P63 405 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 RDH14Q9HBH5 336 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 IMP3Q9NV31 184 aaKnown RBP18.81■□□□□ 0.6
SYNE4-202ENST00000340477 SCHIP1Q9P0W5 487 aaPredicted RBP18.81■□□□□ 0.6
SYNE4-202ENST00000340477 SATB2Q9UPW6 733 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 HEBP2Q9Y5Z4 205 aa18.81■□□□□ 0.6
SYNE4-202ENST00000340477 MAP1BP46821 2468 aaKnown RBP18.81■□□□□ 0.6
SYNE4-202ENST00000340477 IFRD1O00458 451 aaPredicted RBP18.8■□□□□ 0.6
SYNE4-202ENST00000340477 AVILO75366 819 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 MPOP05164 745 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 BRAFP15056 766 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 CD1CP29017 333 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 SLC19A1P41440 591 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 KRT33BQ14525 404 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 DNAJC21Q5F1R6 531 aaKnown RBP18.8■□□□□ 0.6
SYNE4-202ENST00000340477 RNASEH2BQ5TBB1 312 aaKnown RBP18.8■□□□□ 0.6
SYNE4-202ENST00000340477 NKAIN2Q5VXU1 208 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 IZUMO3Q5VZ72 239 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 MRNIPQ6NTE8 343 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 B3GNT8Q7Z7M8 397 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 SDCCAG8Q86SQ7 713 aaPredicted RBP18.8■□□□□ 0.6
SYNE4-202ENST00000340477 CAND1Q86VP6 1230 aaKnown RBP18.8■□□□□ 0.6
SYNE4-202ENST00000340477 JAMLQ86YT9 394 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 CLDN19Q8N6F1 224 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 NAT8LQ8N9F0 302 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 OR4D9Q8NGE8 314 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 C12orf66Q96MD2 445 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 CMKLR1Q99788 373 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 NUDT22Q9BRQ3 303 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 WWP1Q9H0M0 922 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 ZNF624Q9P2J8 865 aaPredicted RBP18.8■□□□□ 0.6
SYNE4-202ENST00000340477 MAD1L1Q9Y6D9 718 aa18.8■□□□□ 0.6
SYNE4-202ENST00000340477 SMAPO00193 183 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 CASC3O15234 703 aaKnown RBP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 SGTAO43765 313 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 BRINP1O60477 761 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 VAPBO95292 243 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 POLBP06746 335 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 JMJD7P0C870 316 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 MTHFD1P11586 935 aaKnown RBP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 AMD1P17707 334 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 MLLT3P42568 568 aaPredicted RBP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 PLOD1Q02809 727 aaPredicted RBP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 RPA4Q13156 261 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 SQSTM1Q13501 440 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 TRA2AQ13595 282 aaKnown RBP eCLIP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 CLCA4Q14CN2 919 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 PLCL1Q15111 1095 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 RPE65Q16518 533 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 RNF187Q5TA31 235 aaPredicted RBP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 KIAA0930Q6ICG6 404 aaPredicted RBP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 KLHL35Q6PF15 583 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 RAB11FIP2Q7L804 512 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 FBXO39Q8N4B4 442 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 NCSTNQ92542 709 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 ELMO1Q92556 727 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 ZNF669Q96BR6 464 aaPredicted RBP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 MFSD3Q96ES6 412 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 CCDC97Q96F63 343 aaPredicted RBP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 C16orf45Q96MC5 204 aaPredicted RBP18.79■□□□□ 0.6
SYNE4-202ENST00000340477 COG4Q9H9E3 785 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 SLC40A1Q9NP59 571 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 THSD1Q9NS62 852 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 WDR37Q9Y2I8 494 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 PCDHGA8Q9Y5G5 932 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 COLEC10Q9Y6Z7 277 aa18.79■□□□□ 0.6
SYNE4-202ENST00000340477 FAM237BA0A1B0GVD1 139 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 LIN7AO14910 233 aaPredicted RBP18.78■□□□□ 0.6
SYNE4-202ENST00000340477 PLD2O14939 933 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 NDUFS3O75489 264 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 UBXN7O94888 489 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 NDUFS1P28331 727 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 PTGIRP43119 386 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 TMEM71Q6P5X7 295 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 WDR74Q6RFH5 385 aaPredicted RBP18.78■□□□□ 0.6
SYNE4-202ENST00000340477 CES3Q6UWW8 571 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 PROSER1Q86XN7 944 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 PLXDC1Q8IUK5 500 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 SLITRK4Q8IW52 837 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 CCDC74BQ96LY2 380 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 ZNF578Q96N58 590 aaPredicted RBP18.78■□□□□ 0.6
SYNE4-202ENST00000340477 KRT12Q99456 494 aa18.78■□□□□ 0.6
SYNE4-202ENST00000340477 TBC1D10AQ9BXI6 508 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms