RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 H3BQ06 376 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 K7EQS6 105 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 AP2A2O94973 939 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 ENO3P13929 434 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 RBBP7Q16576 425 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 C18orf21Q32NC0 220 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 TMEM198Q66K66 360 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 CYHR1Q6ZMK1 362 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 PHYKPLQ8IUZ5 450 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 CLYBLQ8N0X4 340 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 PELI3Q8N2H9 469 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 PDPRQ8NCN5 879 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 CXorf40AQ8TE69 158 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 SKA2Q8WVK7 121 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 ELMO1Q92556 727 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 EZH1Q92800 747 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 MARK4Q96L34 752 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 CATSPER2Q96P56 530 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 RAB3IPQ96QF0 476 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 KCNA7Q96RP8 456 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 EGFL8Q99944 293 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 TBC1D10AQ9BXI6 508 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 HDAC8Q9BY41 377 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 MEAF6Q9HAF1 191 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 ZBTB26Q9HCK0 441 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 FAM8A1Q9UBU6 413 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 A0A1B0GTL3 188 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 SPECC1L-ADORA2AF8WAN1 911 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 E2F3O00716 465 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 AZIN1O14977 448 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 MID1O15344 667 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 SGTAO43765 313 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 FTH1P02794 183 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 TNFRSF4P43489 277 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 FOXA1P55317 472 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 NAA20P61599 178 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 ELF3P78545 371 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-202ENST00000339872 SATB1Q01826 763 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 ENPP2Q13822 863 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 TMEM52BQ4KMG9 183 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 RAET1GQ6H3X3 334 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 RAVER1Q8IY67 606 aaKnown RBP13.16□□□□□ -0.3
HMGB1-202ENST00000339872 POU5F2Q8N7G0 328 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 CEP70Q8NHQ1 597 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 DLG3Q92796 817 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 UTP4Q969X6 686 aaKnown RBP13.16□□□□□ -0.3
HMGB1-202ENST00000339872 RAB7BQ96AH8 199 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 MIPEPQ99797 713 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 BTBD10Q9BSF8 475 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 HGH1Q9BTY7 390 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 CD207Q9UJ71 328 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 BRWD1Q9NSI6 2320 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 K7ESM1 405 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 EIF3FO00303 357 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-202ENST00000339872 GYG2O15488 501 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 SYNCRIPO60506 623 aaKnown RBP13.16□□□□□ -0.3
HMGB1-202ENST00000339872 RNASEH1O60930 286 aaKnown RBP13.16□□□□□ -0.3
HMGB1-202ENST00000339872 CRCPO75575 148 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 RASSF9O75901 435 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 VCLP18206 1134 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 DRD3P35462 400 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 KIR2DL1P43626 348 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-202ENST00000339872 INHBCP55103 352 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 CAMK2GQ13555 558 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-202ENST00000339872 COL19A1Q14993 1142 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 CST6Q15828 149 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 PIP5KL1Q5T9C9 394 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 KANK2Q63ZY3 851 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 CYB5D1Q6P9G0 228 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 VRK3Q8IV63 474 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 TEX9Q8N6V9 391 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 RASGEF1AQ8N9B8 481 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 OR56A4Q8NGH8 313 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 RSPH9Q9H1X1 276 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-202ENST00000339872 RASSF4Q9H2L5 321 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 PRO3102Q9H379 93 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 FADS3Q9Y5Q0 445 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 DNAJC15Q9Y5T4 150 aa13.16□□□□□ -0.3
HMGB1-202ENST00000339872 COL4A2P08572 1712 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 B2RBV5 119 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 QSOX1O00391 747 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 GIPC1O14908 333 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 KPNA5O15131 536 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 MLYCDO95822 493 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 SOD1P00441 154 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 FGF4P08620 206 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 CTHP32929 405 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 GPR1P46091 355 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 CTSCP53634 463 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 MXRA7P84157 204 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 TMEM115Q12893 351 aaPredicted RBP13.15□□□□□ -0.3
HMGB1-202ENST00000339872 KLF10Q13118 480 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 GBX1Q14549 363 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 UGT3A2Q3SY77 523 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 C2orf27AQ580R0 203 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 PLEKHS1Q5SXH7 462 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 ZNF765Q7L2R6 523 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 TRIM74Q86UV6 250 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 LONP2Q86WA8 852 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms