RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 STARP49675 285 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 BIKQ13323 160 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 DCST1Q5T197 706 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 LAPTM4BQ86VI4 370 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 CERS5Q8N5B7 392 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC45A3Q96JT2 553 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 KLHL32Q96NJ5 620 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 PHF12Q96QT6 1004 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 A0A1W2PP18 115 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 EFCAB9A8MZ26 197 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 IFNA7P01567 189 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 AP1S2P56377 157 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ARPC4P59998 168 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 DAG1Q14118 895 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 CERCAMQ5T4B2 595 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 FAM91A1Q658Y4 838 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 MBLAC2Q68D91 279 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 PCDH19Q8TAB3 1148 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 NCKAP1Q9Y2A7 1128 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 TLR6Q9Y2C9 796 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 HSPE1-MOB4S4R3N1 261 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 METTL21EPA6NDL7 271 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 E7ESA3 106 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 POMCP01189 267 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ITGAXP20702 1163 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 EN1Q05925 392 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 VGLL4Q14135 290 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 PPM1LQ5SGD2 360 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 JOSD2Q8TAC2 188 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 TMEM174Q8WUU8 243 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 NACC2Q96BF6 587 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 LINC00854A0A1B0GVQ3 168 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 PDLIM1O00151 329 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 GRM6O15303 877 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ACADMP11310 421 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 MANFP55145 182 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 LRRC58Q96CX6 371 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 MRPL45Q9BRJ2 306 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 RAB11FIP5Q9BXF6 653 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 STX16-NPEPL1H3BU86 382 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 STX16O14662 325 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 TYROBPO43914 113 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ENO2P09104 434 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 VPS26BQ4G0F5 336 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ANKRD22Q5VYY1 191 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 MEIOBQ8N635 442 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 PIGXQ8TBF5 258 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 PPM1MQ96MI6 270 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 TRIB3Q96RU7 358 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 CIPCQ9C0C6 399 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 OSGEPL1Q9H4B0 414 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 MTRRQ9UBK8 725 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 STYXL1Q9Y6J8 313 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 MTRF1O75570 445 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 IFNA16P05015 189 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ACADLP28330 430 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 SMCO1Q147U7 214 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF311Q5JNZ3 666 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 KLHL35Q6PF15 583 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 SLITRK4Q8IW52 837 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 GEMIN6Q8WXD5 167 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 DTLQ9NZJ0 730 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 EIF5AP63241 154 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 HEPACAMQ14CZ8 416 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 LDLRAP1Q5SW96 308 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 HDAC2Q92769 488 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 UFD1Q92890 307 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 NXNL1Q96CM4 212 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 FGFBP2Q9BYJ0 223 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 TRIT1Q9H3H1 467 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 RERGLQ9H628 205 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 FFAR3O14843 346 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 GPR42O15529 346 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 NOS1APO75052 506 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 SEMA3DO95025 777 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 IQCCQ4KMZ1 466 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 FSTL5Q8N475 847 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 TRAPPC12Q8WVT3 735 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 DIRAS2Q96HU8 199 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 TRIM2Q9C040 744 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF696Q9H7X3 374 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 CNOT6Q9ULM6 557 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 UNKQ9C0B0 810 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 VRTNQ9H8Y1 702 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 FAM105AQ9NUU6 356 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 EVA1BQ9NVM1 165 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 LYVE1Q9Y5Y7 322 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 GRXCR2A6NFK2 248 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ITIH1P19827 911 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 KELP23276 732 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 IL18Q14116 193 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 DRAXINQ8NBI3 349 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 COPS4Q9BT78 406 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 CAB39LQ9H9S4 337 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ZDHHC4Q9NPG8 344 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 CHRAC1Q9NRG0 131 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 BTRCQ9Y297 605 aa10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF638Q14966 1978 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 AKAP8O43823 692 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-202ENST00000336838 TLR5O60602 858 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms