RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CDK15Q96Q40 435 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 FAM49AQ9H0Q0 323 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 TRIM39Q9HCM9 518 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 C14orf119Q9NWQ9 140 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 LEF1Q9UJU2 399 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 IKZF3Q9UKT9 509 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 EIF3LQ9Y262 564 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 NAALAD2Q9Y3Q0 740 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 BCKDKO14874 412 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 HLA-DQB2P05538 268 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 PRSS56P0CW18 603 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 MAXP61244 160 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 CCSAPQ6IQ19 270 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 DCP2Q8IU60 420 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 HID1Q8IV36 788 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 MICU2Q8IYU8 434 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 OR10A6Q8NH74 314 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 SUN5Q8TC36 379 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 PROX1Q92786 737 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 MRGPRX2Q96LB1 330 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 TTYH2Q9BSA4 534 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 RIBC2Q9H4K1 309 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 IKZF5Q9H5V7 419 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 GLOD4Q9HC38 313 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 ADGRE2Q9UHX3 823 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 FBXW11Q9UKB1 542 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 SNX6Q9UNH7 406 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 NCAM2O15394 837 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 DFNA5O60443 496 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 FGF4P08620 206 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 INSRRP14616 1297 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 CD1DP15813 335 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 CYP2C18P33260 490 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 VGLL4Q14135 290 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 PRSS36Q5K4E3 855 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 BNIPLQ7Z465 357 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 OSTM1Q86WC4 334 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 ZNF540Q8NDQ6 660 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 IL17RDQ8NFM7 739 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 ISG20Q96AZ6 181 aaKnown RBP13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 ZBED2Q9BTP6 218 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 AIG1Q9NVV5 245 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 TMEFF2Q9UIK5 374 aaPredicted RBP13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 OSGIN1Q9UJX0 560 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 ZNF225Q9UK10 706 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 AAR2Q9Y312 384 aaKnown RBP13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 RLFQ13129 1914 aa13.27□□□□□ -0.28
CCDC88C-201ENST00000331194 LINC00854A0A1B0GVQ3 168 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 PABPN1LA6NDY0 278 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 NDST3O95803 873 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 PAMP19021 973 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 RPL34P49207 117 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 GBX1Q14549 363 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 FKBP1CQ5VVH2 108 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 ZNF549Q6P9A3 640 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 PAQR9Q6ZVX9 377 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 CILP2Q8IUL8 1156 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 FAM20CQ8IXL6 584 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 SVOPQ8N4V2 548 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 TTC39CQ8N584 583 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 ZNF583Q96ND8 569 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 ACTR8Q9H981 624 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 RGS18Q9NS28 235 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 VNN3Q9NY84 501 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 ADAMTS5Q9UNA0 930 aa13.27□□□□□ -0.29
CCDC88C-201ENST00000331194 SBF1O95248 1867 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 AGAP5A6NIR3 686 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 TSPAN1O60635 241 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 PRKACBP22694 351 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 DCTP40126 519 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 CLK1P49759 484 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 TIAL1Q01085 375 aaKnown RBP eCLIP13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 KIAA0930Q6ICG6 404 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 DET1Q7L5Y6 550 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 PARP16Q8N5Y8 322 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 ASCC1Q8N9N2 400 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 FNDC5Q8NAU1 212 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 OR6F1Q8NGZ6 308 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 KLRG1Q96E93 195 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 SLC47A1Q96FL8 570 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 ZFYVE19Q96K21 471 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 TMEM246Q9BRR3 403 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 MUC13Q9H3R2 512 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 TMEM30AQ9NV96 361 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 RBM22Q9NW64 420 aaKnown RBP eCLIP13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 VAPAQ9P0L0 249 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 DNAJB9Q9UBS3 223 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 BRCA1P38398 1863 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 SUPT3HB4E1H0 165 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 M0QX08 132 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 GSTA4O15217 222 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 MTSS1O43312 755 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 C22orf31O95567 290 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 CD4P01730 458 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 RPS12P25398 132 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 ADRA1AP35348 466 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 LIPAP38571 399 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 ST13P50502 369 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 C9orf57Q5W0N0 161 aa13.26□□□□□ -0.29
CCDC88C-201ENST00000331194 CYP4Z1Q86W10 505 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms