RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 NMBRP28336 390 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 GAS1P54826 345 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 PITX1P78337 314 aaPredicted RBP3.23□□□□□ -1.89
HMGB1-201ENST00000326004 RUNX1T1Q06455 604 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 WBP2NLQ6ICG8 309 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 OR7E24Q6IFN5 339 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 PAPD5Q8NDF8 572 aaKnown RBP3.23□□□□□ -1.89
HMGB1-201ENST00000326004 OR52I2Q8NH67 350 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 TBC1D16Q8TBP0 767 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 SMPDL3BQ92485 455 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 LPGAT1Q92604 370 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 TMCO6Q96DC7 493 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 ABHD8Q96I13 439 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 NEK1Q96PY6 1258 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 GCNAQ96QF7 691 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 SERINC2Q96SA4 455 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 APOL6Q9BWW8 343 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 MOV10L1Q9BXT6 1211 aaKnown RBP3.23□□□□□ -1.89
HMGB1-201ENST00000326004 CSTL1Q9H114 145 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 PPIL3Q9H2H8 161 aaKnown RBP3.23□□□□□ -1.89
HMGB1-201ENST00000326004 KLHL9Q9P2J3 617 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 RALYQ9UKM9 306 aaKnown RBP3.23□□□□□ -1.89
HMGB1-201ENST00000326004 MAGED1Q9Y5V3 778 aaPredicted RBP3.23□□□□□ -1.89
HMGB1-201ENST00000326004 GAPVD1Q14C86 1478 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 CHD1O14646 1710 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 KIF13AQ9H1H9 1805 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 hCG_1809904A0A1W2PP81 198 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 A0A1W2PPE2 198 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 A0A1W2PR64 198 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 TCRBV21S2A2A0A5A6 115 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 CTAGE9A4FU28 777 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 PRAC2D3DTV9 90 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 PLK4O00444 970 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 IPO8O15397 1037 aaKnown RBP3.22□□□□□ -1.89
HMGB1-201ENST00000326004 P4HA2O15460 535 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 SSX4O60224 188 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 PRAMEF11O60813 436 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 BMP10O95393 424 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 LDLRP01130 860 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 CTAGE8P0CG41 777 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 DGKAP23743 735 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 KRT20P35900 424 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 MATR3P43243 847 aaKnown RBP eCLIP3.22□□□□□ -1.89
HMGB1-201ENST00000326004 ARCN1P48444 511 aaKnown RBP3.22□□□□□ -1.89
HMGB1-201ENST00000326004 FUT6P51993 359 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 CD81P60033 236 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 UBXN2AP68543 259 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 GAGE5Q13069 117 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 GAGE6Q13070 117 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 MELKQ14680 651 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 NR1D2Q14995 579 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 SLC30A6Q6NXT4 461 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 FAM171BQ6P995 826 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 CEP57Q86XR8 500 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 CTAGE4Q8IX94 777 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 GBGT1Q8N5D6 347 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 RFLNBQ8N5W9 214 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 METTL27Q8N6F8 245 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-201ENST00000326004 POGLUT1Q8NBL1 392 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 POC1AQ8NBT0 407 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 TSPAN14Q8NG11 270 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 OR10S1Q8NGN2 331 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 ERP27Q96DN0 273 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 DGAT2Q96PD7 388 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 CDRT15Q96T59 188 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 LRRC1Q9BTT6 524 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 TXLNGYQ9BZA5 131 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 SEMA6AQ9H2E6 1030 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 RETREG1Q9H6L5 497 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 ABCF3Q9NUQ8 709 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 CEP164Q9UPV0 1460 aa3.22□□□□□ -1.89
HMGB1-201ENST00000326004 A0A0G2JNG1 304 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 SYNGR3O43761 229 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 GPR137BO60478 399 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 CREG1O75629 220 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 KRT36O76013 467 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 WISP2O76076 250 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 CSF2RAP15509 400 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 MCCP23508 829 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 HOXA1P49639 335 aaPredicted RBP3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF132P52740 706 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ERVFC1-1P60608 527 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 RPL36AP83881 106 aaKnown RBP3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ILF3Q12906 894 aaKnown RBP eCLIP3.21□□□□□ -1.9
HMGB1-201ENST00000326004 HNRNPA0Q13151 305 aaKnown RBP3.21□□□□□ -1.9
HMGB1-201ENST00000326004 PRPF4BQ13523 1007 aaKnown RBP3.21□□□□□ -1.9
HMGB1-201ENST00000326004 KIR2DS5Q14953 304 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 TMEM266Q2M3C6 531 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ACCSLQ4AC99 568 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ASPRV1Q53RT3 343 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 C9orf152Q5JTZ5 239 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 PDSS1Q5T2R2 415 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 GCNT6Q5T4J0 391 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 LCE1AQ5T7P2 110 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ADALQ6DHV7 355 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 PACS1Q6VY07 963 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 RAD9BQ6WBX8 426 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 FOXL2NBQ6ZUU3 175 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 LONP2Q86WA8 852 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 DCP1BQ8IZD4 617 aaKnown RBP3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms