RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 IRF9Q00978 393 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 DYNC1I2Q13409 638 aaKnown RBP7.71□□□□□ -1.18
SCN9A-201ENST00000303354 PARP15Q460N3 678 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 CRY2Q49AN0 593 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 VPS26BQ4G0F5 336 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 EEF1AKMT1Q8WVE0 214 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 TIFAQ96CG3 184 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 FZD10Q9ULW2 581 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 A0A0J9YYE9 177 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 REM1O75628 298 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 EN2P19622 333 aaPredicted RBP7.71□□□□□ -1.18
SCN9A-201ENST00000303354 VIPR2P41587 438 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 CACNG1Q06432 222 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 TIGD2Q4W5G0 525 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 AMZ2Q86W34 360 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 ATCAYQ86WG3 371 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 SHDQ96IW2 340 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 TAC3Q9UHF0 121 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 RAPGEFL1Q9UHV5 662 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 CLUHO75153 1309 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 CDC7O00311 574 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 GJB5O95377 273 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 FADS2O95864 444 aaKnown RBP7.71□□□□□ -1.18
SCN9A-201ENST00000303354 SLC7A1P30825 629 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 PPP3R2Q96LZ3 170 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 CMTM6Q9NX76 183 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 TMEM216Q9P0N5 145 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.71□□□□□ -1.18
SCN9A-201ENST00000303354 R3HDM2Q9Y2K5 976 aaKnown RBP7.71□□□□□ -1.18
SCN9A-201ENST00000303354 A0A1B0GVM2 712 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 SLC35F4A4IF30 521 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 TCAF2A6NFQ2 919 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 SNPHO15079 494 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 UGT2B17O75795 530 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 CHRNGP07510 517 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 HEXBP07686 556 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 CDK16Q00536 496 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 MXD1Q05195 221 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 ARHGAP1Q07960 439 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 CHRNA6Q15825 494 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 DHRSXQ8N5I4 330 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 MFSD14AQ96MC6 490 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 SLC38A2Q96QD8 506 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 NDC1Q9BTX1 674 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 TMEM27Q9HBJ8 222 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 LRTM1Q9HBL6 345 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 SLCO1B3Q9NPD5 702 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 ACTL7BQ9Y614 415 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 COL1A2P08123 1366 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 FER1L4A9Z1Z3 1794 aa7.71□□□□□ -1.18
SCN9A-201ENST00000303354 TMEM265A0A087WTH1 108 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 UPK3BL1B0FP48 263 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 UPK3BL2E5RIL1 263 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 PLOD3O60568 738 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 COL6A1P12109 1028 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 COX4I1P13073 169 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 PTPN4P29074 926 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 GGT5P36269 586 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 VLDLRP98155 873 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 SIM2Q14190 667 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 LSM12Q3MHD2 195 aaKnown RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 LY6G5CQ5SRR4 150 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 CUZD1Q86UP6 607 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 TMEM151BQ8IW70 566 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 PAAF1Q9BRP4 392 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 TPK1Q9H3S4 243 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 TDP1Q9NUW8 608 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 BTBD3Q9Y2F9 522 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 TESMINQ9Y4I5 508 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 LOC102724159A0A0B4J2E5 919 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 CASRP41180 1078 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 PWP2Q15269 919 aaKnown RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 KRT74Q7RTS7 529 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 ELOA2Q8IYF1 753 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 MPP5Q8N3R9 675 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 PXYLP1Q8TE99 480 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 CD101Q93033 1021 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 MRTO4Q9UKD2 239 aaKnown RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 OAS3Q9Y6K5 1087 aaKnown RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 PEX12O00623 359 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 KLK1P06870 262 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 OTX2P32243 289 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 STK19P49842 368 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 IL23RQ5VWK5 629 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 CLPTM1LQ96KA5 538 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 ACE2Q9BYF1 805 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 PCDHB3Q9Y5E6 796 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 FGF1P05230 155 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 SNU13P55769 128 aaKnown RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 SEMA3AQ14563 771 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 SOWAHAQ2M3V2 549 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 SAMD4BQ5PRF9 694 aaKnown RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 PRPF38BQ5VTL8 546 aaKnown RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 FAR1Q8WVX9 515 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 EBNA1BP2Q99848 306 aaKnown RBP7.7□□□□□ -1.18
SCN9A-201ENST00000303354 EXD2Q9NVH0 621 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 PCYOX1Q9UHG3 505 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 TRIM64A6NGJ6 449 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 CLPTM1O96005 669 aa7.7□□□□□ -1.18
SCN9A-201ENST00000303354 LAMP2P13473 410 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms