RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LCP2Q13094 533 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 ZNF423Q2M1K9 1284 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 UGT2A3Q6UWM9 527 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 HFE2Q6ZVN8 426 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 DEPDC4Q8N2C3 294 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 PACRGLQ8N7B6 248 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 SCAMP5Q8TAC9 235 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 RNF38Q9H0F5 515 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 FAIMQ9NVQ4 179 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 CLN6Q9NWW5 311 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 ENOPH1Q9UHY7 261 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 SLC9A8Q9Y2E8 581 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 DPYSL4O14531 572 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 FGF10O15520 208 aaPredicted RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 ETV4P43268 484 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 TUFMP49411 452 aaKnown RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 C16orf62Q7Z3J2 963 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 TMBIM1Q969X1 311 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 MUC13Q9H3R2 512 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 POLR2AP24928 1970 aaKnown RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 OTCP00480 354 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 SLC1A2P43004 574 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 IRF8Q02556 426 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 MXD1Q05195 221 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 DUSP4Q13115 394 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 ACAP2Q15057 778 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 TIFABQ6ZNK6 161 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 DET1Q7L5Y6 550 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 TAC4Q86UU9 113 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 LGI2Q8N0V4 545 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 TCAIMQ8N3R3 496 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 PHF10Q8WUB8 498 aaKnown RBP15.18■□□□□ 0.02
SHH-201ENST00000297261 ING3Q9NXR8 418 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 PAGE1O75459 146 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 CHRNA1P02708 482 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 GPR15P49685 360 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 DPYSL2Q16555 572 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 C11orf88Q6PI97 169 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 AGMOQ6ZNB7 445 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 ANKS3Q6ZW76 656 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 MON1AQ86VX9 555 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 ANKRD46Q86W74 232 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 CARNMT1Q8N4J0 409 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 GANCQ8TET4 914 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 TMEM74Q96NL1 305 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 TMEM9Q9P0T7 183 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 TCAF1Q9Y4C2 921 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 NPEPPSL1A6NEC2 478 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 hCG_2039718K7EN88 272 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 SCAMP3O14828 347 aaKnown RBP15.18■□□□□ 0.02
SHH-201ENST00000297261 SNAP29O95721 258 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 EOMESO95936 686 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 ACADVLP49748 655 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 ZNF252P-AS1Q0IIN9 211 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 MEP1AQ16819 746 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 MUS81Q96NY9 551 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 GFM1Q96RP9 751 aaKnown RBP15.18■□□□□ 0.02
SHH-201ENST00000297261 ZIC5Q96T25 663 aa15.18■□□□□ 0.02
SHH-201ENST00000297261 UBA2Q9UBT2 640 aaPredicted RBP15.18■□□□□ 0.02
SHH-201ENST00000297261 AREL1O15033 823 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 TULP3O75386 442 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 PRKD3O94806 890 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 OR4F21O95013 312 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 RAP2AP10114 183 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 PBLDP30039 288 aaPredicted RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 CYP4F8P98187 520 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 PLD1Q13393 1074 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 NPTX1Q15818 432 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 ARMC8Q8IUR7 673 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 CACTIN-AS1Q8N1I8 211 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 OR52J3Q8NH60 311 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 SCLYQ96I15 445 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 KCNS3Q9BQ31 491 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 MAGEE1Q9HCI5 957 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 FZD10Q9ULW2 581 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 SIPA1L1O43166 1804 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 SNX4O95219 450 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 AHSGP02765 367 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 TFAP2AP05549 437 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 PBX3P40426 434 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 AKR1D1P51857 326 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 EPHB3P54753 998 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 OLR1P78380 273 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 MS4A2Q01362 244 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 SPIBQ01892 262 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 RELAQ04206 551 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 ELP6Q0PNE2 266 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 IRF5Q13568 498 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 VARS2Q5ST30 1063 aaKnown RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 LRRC17Q8N6Y2 441 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 MRPS31Q92665 395 aaKnown RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 TADA1Q96BN2 335 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 MIR1-1HGQ9H1L0 117 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 EHD1Q9H4M9 534 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 CRTAC1Q9NQ79 661 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 TMPRSS4Q9NRS4 437 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 MRPL39Q9NYK5 338 aaKnown RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 PCDHB8Q9UN66 801 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 SSR3Q9UNL2 185 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 SLC22A1O15245 554 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms