RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 KCNJ13O60928 360 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 PIAS1O75925 651 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 HAUS5O94927 633 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 TRIM16O95361 564 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 OR56A5P0C7T3 313 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 VCLP18206 1134 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 IDSP22304 550 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 RPS3P23396 243 aaKnown RBP eCLIP12.52□□□□□ -0.41
SS18-202ENST00000269138 GABRB3P28472 473 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 GPX6P59796 221 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 FRG1Q14331 258 aaKnown RBP12.52□□□□□ -0.41
SS18-202ENST00000269138 CLCA4Q14CN2 919 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 BRD3Q15059 726 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 PPM1JQ5JR12 505 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 PERM1Q5SV97 790 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 UBAP2Q5T6F2 1119 aaKnown RBP12.52□□□□□ -0.41
SS18-202ENST00000269138 TEDDM1Q5T9Z0 273 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 PTRHD1Q6GMV3 140 aaKnown RBP12.52□□□□□ -0.41
SS18-202ENST00000269138 CNSTQ6PJW8 725 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 EFL1Q7Z2Z2 1120 aaKnown RBP12.52□□□□□ -0.41
SS18-202ENST00000269138 IFT20Q8IY31 132 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 C2CD4AQ8NCU7 369 aaPredicted RBP12.52□□□□□ -0.41
SS18-202ENST00000269138 GSDMBQ8TAX9 411 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 HM13Q8TCT9 377 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 SLC37A2Q8TED4 501 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 GLMNQ92990 594 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 FAM167BQ9BTA0 163 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 PHACTR1Q9C0D0 580 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 MOCS1Q9NZB8 636 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 RABGEF1Q9UJ41 708 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 NFU1Q9UMS0 254 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 RNF215Q9Y6U7 377 aa12.52□□□□□ -0.41
SS18-202ENST00000269138 ARHGEF17Q96PE2 2063 aaPredicted RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 GOLGA4Q13439 2230 aaKnown RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 PRAMEF33A0A0G2JMD5 474 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 EME2A4GXA9 379 aaPredicted RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 OR52A4PA6NMU1 304 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 FTH1P19P0C7X4 201 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 F3P13726 295 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 ACP1P24666 158 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 PDHA2P29803 388 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 CCR7P32248 378 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 ABCG1P45844 678 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 PREPP48147 710 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 RPIAP49247 311 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 CSE1LP55060 971 aaKnown RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 MGAT5Q09328 741 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 RNF187Q5TA31 235 aaPredicted RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 AGAP9Q5VTM2 703 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 ZNF549Q6P9A3 640 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 ABRAXAS1Q6UWZ7 409 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 CNTN4Q8IWV2 1026 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 LMNTD2Q8IXW0 634 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 SFRP1Q8N474 314 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 SPDYE1Q8NFV5 336 aaPredicted RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 IFI44Q8TCB0 444 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 CALML6Q8TD86 181 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 ELMO1Q92556 727 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 FAM136AQ96C01 138 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 FAM129AQ9BZQ8 928 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 WWP1Q9H0M0 922 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 COG4Q9H9E3 785 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 LRRC4CQ9HCJ2 640 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 SMYD2Q9NRG4 433 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 INTS10Q9NVR2 710 aaKnown RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 ZNF624Q9P2J8 865 aaPredicted RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 GALPQ9UBC7 116 aa12.51□□□□□ -0.41
SS18-202ENST00000269138 MTRF1LQ9UGC7 380 aaKnown RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 COL5A1P20908 1838 aaPredicted RBP12.51□□□□□ -0.41
SS18-202ENST00000269138 C17orf113A0A1B0GUU1 675 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 PFDN6O15212 129 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 PPM1DO15297 605 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 NIPSNAP2O75323 286 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 SLU7O95391 586 aaKnown RBP12.5□□□□□ -0.41
SS18-202ENST00000269138 AHSGP02765 367 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 FTH1P02794 183 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 SLC19A1P41440 591 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 DUSP3P51452 185 aaPredicted RBP12.5□□□□□ -0.41
SS18-202ENST00000269138 CLDN6P56747 220 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 CUL1Q13616 776 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 N4BP2L1Q5TBK1 243 aaPredicted RBP12.5□□□□□ -0.41
SS18-202ENST00000269138 WASH2PQ6VEQ5 465 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 C3orf62Q6ZUJ4 267 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 LRRC6Q86X45 466 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 ZNF761Q86XN6 746 aaPredicted RBP12.5□□□□□ -0.41
SS18-202ENST00000269138 Q8N9G6 341 aaPredicted RBP12.5□□□□□ -0.41
SS18-202ENST00000269138 MAPK15Q8TD08 544 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 CCDC74AQ96AQ1 378 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 RMDN2Q96LZ7 410 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 INSM2Q96T92 566 aaPredicted RBP12.5□□□□□ -0.41
SS18-202ENST00000269138 FMO2Q99518 471 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 VPS37BQ9H9H4 285 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 WASH6PQ9NQA3 447 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 NCKIPSDQ9NZQ3 722 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 LRIT1Q9P2V4 623 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 GNPTGQ9UJJ9 305 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 PSAT1Q9Y617 370 aa12.5□□□□□ -0.41
SS18-202ENST00000269138 CFAP20Q9Y6A4 193 aaKnown RBP12.5□□□□□ -0.41
SS18-202ENST00000269138 TCRBV9S1A1TA0A576 114 aa12.49□□□□□ -0.41
SS18-202ENST00000269138 SLC5A10A0PJK1 596 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms