RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ATG13O75143 517 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 GPC4O75487 556 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 CDK14O94921 469 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 SLCO2B1O94956 709 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 CHRNGP07510 517 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 GSTM1P09488 218 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 MPC1LP0DKB6 136 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 KITP10721 976 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 HK3P52790 923 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 ALDH18A1P54886 795 aaKnown RBP13.87□□□□□ -0.19
SS18-201ENST00000269137 GSTM4Q03013 218 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 TGFBIQ15582 683 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 PPP1R3AQ16821 1122 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 UNC50Q53HI1 259 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 TMEM220Q6QAJ8 160 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 FRMD7Q6ZUT3 714 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 TRPM8Q7Z2W7 1104 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 YTHDF3Q7Z739 585 aaKnown RBP13.87□□□□□ -0.19
SS18-201ENST00000269137 ZNF781Q8N8C0 355 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 ASB12Q8WXK4 309 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 EXT2Q93063 718 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 CCM2Q9BSQ5 444 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 TMEM120AQ9BXJ8 343 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 GSTO2Q9H4Y5 243 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 EML4Q9HC35 981 aaKnown RBP13.87□□□□□ -0.19
SS18-201ENST00000269137 DOCK9Q9BZ29 2069 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 ATXN2Q99700 1313 aaKnown RBP13.86□□□□□ -0.19
SS18-201ENST00000269137 A0A1W2PQU0 124 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 OR2AG2A6NM03 316 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 CHURC1-FNTBB4DL54 471 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 MYO1CO00159 1063 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 LILRB5O75023 590 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 NDUFV2P19404 249 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 RPL14P50914 215 aaKnown RBP13.86□□□□□ -0.19
SS18-201ENST00000269137 AQP5P55064 265 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 HSPA14Q0VDF9 509 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 SGCGQ13326 291 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 FGL2Q14314 439 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 HORMAD1Q86X24 394 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 PLA2G15Q8NCC3 412 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 ELMO1Q92556 727 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 ASB2Q96Q27 587 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 OR2AG1Q9H205 316 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 STN1Q9H668 368 aaKnown RBP13.86□□□□□ -0.19
SS18-201ENST00000269137 RDH14Q9HBH5 336 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 ACSS2Q9NR19 701 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 ARHGEF3Q9NR81 526 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 WNT16Q9UBV4 365 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 GPR34Q9UPC5 381 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 SORCS3Q9UPU3 1222 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 CDYLQ9Y232 598 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 OARD1Q9Y530 152 aa13.86□□□□□ -0.19
SS18-201ENST00000269137 SLCO1B7G3V0H7 640 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 ZNF195O14628 629 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 RAD51BO15315 384 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 SNX2O60749 519 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 RNGTTO60942 597 aaKnown RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 DCTN3O75935 186 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 SUPT7LO94864 414 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 ACADMP11310 421 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 TRIM23P36406 574 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 CCR10P46092 362 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 CORO7P57737 925 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 ZP2Q05996 745 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 GTF2H3Q13889 308 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 ZNF658BQ4V348 819 aaPredicted RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 CDKL4Q5MAI5 379 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 FRA10AC1Q70Z53 315 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 TRIM74Q86UV6 250 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 KIRREL3Q8IZU9 778 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 BEND7Q8N7W2 519 aaPredicted RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 TP53I13Q8NBR0 393 aaPredicted RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 ASB11Q8WXH4 323 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 CCT6BQ92526 530 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 LINC00615Q96LM1 132 aaPredicted RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 LENG8Q96PV6 779 aaPredicted RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 C1QTNF7Q9BXJ2 289 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 TEX101Q9BY14 249 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 SLC17A9Q9BYT1 436 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 CD274Q9NZQ7 290 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 ATXN10Q9UBB4 475 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 MRPS17Q9Y2R5 130 aaKnown RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 TCRBV21S2A2A0A5A6 115 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 MATN2O00339 956 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 SLC16A5O15375 505 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 FFAR2O15552 330 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 SIX3O95343 332 aaPredicted RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 PAK4O96013 591 aaPredicted RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 PCCBP05166 539 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 C8GP07360 202 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 RPS17P08708 135 aaKnown RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 GABRG2P18507 467 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 MPSTP25325 297 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 DGKEP52429 567 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 CDK3Q00526 305 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 BOP1Q14137 746 aaKnown RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 LRRC32Q14392 662 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 SETDB1Q15047 1291 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 HABP4Q5JVS0 413 aaKnown RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 ANKS6Q68DC2 871 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms