RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 ZNF398Q8TD17 642 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 ALG3Q92685 438 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 CXorf40BQ96DE9 158 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 MRFAP1L1Q96HT8 127 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 SLC45A3Q96JT2 553 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 TGM7Q96PF1 710 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 FICDQ9BVA6 458 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 FSD1LQ9BXM9 530 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 OSBPL8Q9BZF1 889 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 ZCCHC2Q9C0B9 1178 aaKnown RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 LACRTQ9GZZ8 138 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 ZNF768Q9H5H4 540 aaKnown RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 SMOXQ9NWM0 555 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 GEMIN8Q9NWZ8 242 aaKnown RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 EPHA6Q9UF33 1036 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 ARL5AQ9Y689 179 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 ANKRD36A6QL64 1941 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 LOC101059948A0A1B0GTJ6 334 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 CCDC66A2RUB6 948 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 C5orf60A6NFR6 353 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 ESPNB1AK53 854 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 NKX2-8O15522 239 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 PJA2O43164 708 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 KIF1CO43896 1103 aaKnown RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 IPO7O95373 1038 aaKnown RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 DLGAP3O95886 979 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 RBP3P10745 1247 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 PYGMP11217 842 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 LPOP22079 712 aaPredicted RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 CTNNA2P26232 953 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 CAPZBP47756 277 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 SEPHS1P49903 392 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 NAP1L1P55209 391 aaKnown RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 RWDD2BP57060 319 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 EIF3EP60228 445 aaKnown RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 SH3BP2P78314 561 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 FOXM1Q08050 763 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 ABHD18Q0P651 414 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 NFATC3Q12968 1075 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 IL11RAQ14626 422 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 TAF1AQ15573 450 aaPredicted RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 RPE65Q16518 533 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 ANKRD20A2Q5SQ80 823 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 CCDC181Q5TID7 509 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 ANKRD20A1Q5TYW2 823 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 ANKRD20A3Q5VUR7 823 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 ITPRIPL1Q6GPH6 555 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 RAD9BQ6WBX8 426 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 FAM83HQ6ZRV2 1179 aaPredicted RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 PRSS42Q7Z5A4 293 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 UNC5BQ8IZJ1 945 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 LRRC57Q8N9N7 239 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 OR4K2Q8NGD2 314 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 KLHL6Q8WZ60 621 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 RSC1A1Q92681 617 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 ZDHHC12Q96GR4 267 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 ZNF514Q96K75 400 aaPredicted RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 APOL2Q9BQE5 337 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 RAB33BQ9H082 229 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 RBSNQ9H1K0 784 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 TRIT1Q9H3H1 467 aaKnown RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 GPN2Q9H9Y4 310 aaPredicted RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 SEMA5BQ9P283 1151 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 AAR2Q9Y312 384 aaKnown RBP9.53□□□□□ -0.88
VPS41-201ENST00000265745 KCTD3Q9Y597 815 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 SHROOM3Q8TF72 1996 aa9.53□□□□□ -0.88
VPS41-201ENST00000265745 GRID2IPA4D2P6 1211 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 MGAT4DA6NG13 374 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 OR2AG2A6NM03 316 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 C2orf81A6NN90 581 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 ZNF891A8MT65 544 aaPredicted RBP9.52□□□□□ -0.89
VPS41-201ENST00000265745 AGAP14A8MT82 685 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 KCNN4O15554 427 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 SLC28A2O43868 658 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 RASSF9O75901 435 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 SRP72O76094 671 aaKnown RBP9.52□□□□□ -0.89
VPS41-201ENST00000265745 TJP3O95049 919 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 PRAMEF1O95521 474 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 MSH3P20585 1137 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 PSMB4P28070 264 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 HALP42357 657 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 XIAPP98170 497 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 OLIG2Q13516 323 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 MAP7Q14244 749 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 NFE2L1Q14494 772 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 PRPSAP1Q14558 356 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 LONRF2Q1L5Z9 754 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 FNBP1LQ5T0N5 605 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 CACHD1Q5VU97 1274 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 DENND5AQ6IQ26 1287 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 AADACL2Q6P093 401 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 BORAQ6PGQ7 559 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 DARS2Q6PI48 645 aaKnown RBP9.52□□□□□ -0.89
VPS41-201ENST00000265745 CDKL3Q8IVW4 592 aaPredicted RBP9.52□□□□□ -0.89
VPS41-201ENST00000265745 CCDC110Q8TBZ0 833 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 ZFPM2Q8WW38 1151 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 KIAA1143Q96AT1 154 aaPredicted RBP9.52□□□□□ -0.89
VPS41-201ENST00000265745 SPATA13Q96N96 652 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 CATSPER2Q96P56 530 aa9.52□□□□□ -0.89
VPS41-201ENST00000265745 OR6C1Q96RD1 312 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms