RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GLP1RP43220 463 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 BDH1Q02338 343 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ZER1Q7Z7L7 766 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 OR4C15Q8NGM1 316 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 WDR37Q9Y2I8 494 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 KIAA0556O60303 1618 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ATP6AP2A0A1C7CYW4 349 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 CLCN3P51790 818 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 CDH8P55286 799 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ERVK-9P63128 1117 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 HEPACAMQ14CZ8 416 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC27A1Q6PCB7 646 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 MALSU1Q96EH3 234 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC39A1Q9NY26 324 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ERVK-11Q9UQG0 969 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 TRAF6Q9Y4K3 522 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 DAPL1A0PJW8 107 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 HK1P19367 917 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 TNFRSF8P28908 595 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 BNIP1Q12981 228 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC39A12Q504Y0 691 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 SNAP47Q5SQN1 464 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 TOMM5Q8N4H5 51 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 IGFLR1Q9H665 355 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 TMEM39AQ9NV64 488 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 FXYD6-FXYD2A0A087WZ82 144 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 ITGA5P08648 1049 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 ANTXR2P58335 489 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 ERVK-24P63145 666 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 SEZ6Q53EL9 994 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 C8orf48Q96LL4 319 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 FXYD6Q9H0Q3 95 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 HTR2AP28223 471 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 KHKP50053 298 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 MXD1Q05195 221 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 DNASE1L3Q13609 305 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 SEC23AQ15436 765 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 XAGE5Q8WWM1 108 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 KCNN1Q92952 543 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 ZDHHC4Q9NPG8 344 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 SAMD9Q5K651 1589 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 IL7RP16871 459 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 GNPDA1P46926 289 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 GCNT1Q02742 428 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 PCBP1Q15365 356 aaKnown RBP eCLIP13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 SMARCD3Q6STE5 483 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 FAM35AQ86V20 835 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC35G6P0C7Q6 338 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 LAS2Q8IYD9 372 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 GDF3Q9NR23 364 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 RPL36Q9Y3U8 105 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 HEBP2Q9Y5Z4 205 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 ATP10BO94823 1461 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 NLRP1Q9C000 1473 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 CXCL8P10145 99 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 GLDCP23378 1020 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 DUPD1Q68J44 220 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 FOXRED2Q8IWF2 684 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 RAVER1Q8IY67 606 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 COQ8AQ8NI60 647 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 BAP1Q92560 729 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 WNT8BQ93098 351 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 MYOZ2Q9NPC6 264 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 C11orf16Q9NQ32 467 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 PDE10AQ9Y233 779 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 CIB4A0PJX0 185 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 CLDN9O95484 217 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 UGT1A3P35503 534 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 GRIA2P42262 883 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 IFI35P80217 286 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 GPR139Q6DWJ6 353 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 C16orf46Q6P387 395 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 PGLYRP2Q96PD5 576 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 THUMPD1Q9NXG2 353 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 TAS2R3Q9NYW6 316 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 RABL2AQ9UBK7 228 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 RABL2BQ9UNT1 228 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 POFUT2Q9Y2G5 429 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 MIPP30301 263 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 TAS2R50P59544 299 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 ERVK-5Q9HDB9 667 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 TFR2Q9UP52 801 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 ITSN1Q15811 1721 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 MYO9BQ13459 2157 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 HOXB9P17482 250 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 SEPT12Q8IYM1 358 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 GALNT15Q8N3T1 639 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 DMRTB1Q96MA1 342 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 POP1Q99575 1024 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 IMP3Q9NV31 184 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 DUSP10Q9Y6W6 482 aa13.78□□□□□ -0.2
CCDC88A-201ENST00000263630 CNTNAP5Q8WYK1 1306 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 ASLP04424 464 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 CYP1A2P05177 515 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 GLYATQ6IB77 296 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF571Q7Z3V5 609 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 RETREG1Q9H6L5 497 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 TMEM165Q9HC07 324 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 MAP4K5Q9Y4K4 846 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 TLL2Q9Y6L7 1015 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms