RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RIMKLAQ8IXN7 391 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 NLGN4XQ8N0W4 816 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 FBXO39Q8N4B4 442 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 OR52B6Q8NGF0 335 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 SMIM14Q96QK8 99 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 DCSTAMPQ9H295 470 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 TREX1Q9NSU2 369 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 COMMD8Q9NX08 183 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 ERVK13-1Q9NX77 482 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 VAPAQ9P0L0 249 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 SNX6Q9UNH7 406 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 PCDHB14Q9Y5E9 798 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 ANK1P16157 1881 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 FAM20BO75063 409 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 ZNF682O95780 498 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 B3GALT4O96024 378 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 CD4P01730 458 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 CD1DP15813 335 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 RCAN2Q14206 197 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 Q6ZPB1 254 aaPredicted RBP14.18□□□□□ -0.14
SDC1-201ENST00000254351 NEK10Q6ZWH5 1172 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 SYVN1Q86TM6 617 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 CNTN4Q8IWV2 1026 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 REM2Q8IYK8 340 aaPredicted RBP14.18□□□□□ -0.14
SDC1-201ENST00000254351 OR2T12Q8NG77 320 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 OR13C4Q8NGS5 318 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 PROKR1Q8TCW9 393 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 PROX1Q92786 737 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 SLC10A4Q96EP9 437 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 ZFP42Q96MM3 310 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 CGREF1Q99674 301 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 AS3MTQ9HBK9 375 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 ENTPD7Q9NQZ7 604 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 EIF3LQ9Y262 564 aaKnown RBP14.18□□□□□ -0.14
SDC1-201ENST00000254351 NRCAMQ92823 1304 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 NPEPPSL1A6NEC2 478 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 PDZK1P1A8MUH7 402 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 MLYCDO95822 493 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 ABCB1P08183 1280 aaPredicted RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 CNPP09543 421 aaKnown RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 MTHFD2P13995 350 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 AZGP1P25311 298 aaKnown RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 ST13P50502 369 aaKnown RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 HNRNPFP52597 415 aaKnown RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 PAQR3Q6TCH7 311 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 B3GNT8Q7Z7M8 397 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 ANKRD46Q86W74 232 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 RHOXF1Q8NHV9 184 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 EFHD2Q96C19 240 aaPredicted RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 TSPAN17Q96FV3 270 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 RUBCNLQ9H714 662 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 PARVBQ9HBI1 364 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 SLC52A3Q9NQ40 469 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 POLR3HQ9Y535 204 aaPredicted RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 PCDHGA10Q9Y5H3 936 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 SLC12A8A0AV02 714 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 FAM92AA1XBS5 289 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 FFAR3O14843 346 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 GPR42O15529 346 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 UPK1BO75841 260 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 HTR6P50406 440 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 PPP5CP53041 499 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 TRAF3Q13114 568 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 GALNT3Q14435 633 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 VARS2Q5ST30 1063 aaKnown RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 ZNF549Q6P9A3 640 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 TAC4Q86UU9 113 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 DYNC2LI1Q8TCX1 351 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 SLIRPQ9GZT3 109 aaKnown RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 GIMAP4Q9NUV9 329 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 EIF2B4Q9UI10 523 aaKnown RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 ORC6Q9Y5N6 252 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 COL11A1P12107 1806 aaPredicted RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 A0A096LPI6 279 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 hCG_2039718K7EN88 272 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 BTN3A1O00481 513 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 SLC22A1O15245 554 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 MTSS1O43312 755 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 GABARAPO95166 117 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 C7P10643 843 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 CXCR2P25025 360 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 C21orf33P30042 268 aaPredicted RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 NR6A1Q15406 480 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 NXNL2Q5VZ03 156 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 RGMBQ6NW40 437 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 IL27RAQ6UWB1 636 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 CYP2U1Q7Z449 544 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 UNC93AQ86WB7 457 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 HID1Q8IV36 788 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 TTC39CQ8N584 583 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 CNDP2Q96KP4 475 aaKnown RBP14.17□□□□□ -0.14
SDC1-201ENST00000254351 TNIP3Q96KP6 325 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 KCNS3Q9BQ31 491 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 OSBPL10Q9BXB5 764 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 QPCTLQ9NXS2 382 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 ERAP1Q9NZ08 941 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 N6AMT1Q9Y5N5 214 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 PPP2R3BQ9Y5P8 575 aa14.17□□□□□ -0.14
SDC1-201ENST00000254351 J3KR12 359 aa14.16□□□□□ -0.14
SDC1-201ENST00000254351 DYRK3O43781 588 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms