RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 ALPPL2P10696 532 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 ITGB6P18564 788 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 FMO4P31512 558 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 EIF3BP55884 814 aaKnown RBP12.98□□□□□ -0.33
GTF3A-209ENST00000640289 SEPT7Q16181 437 aaKnown RBP12.98□□□□□ -0.33
GTF3A-209ENST00000640289 INAVAQ3KP66 663 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 CTSL3PQ5NE16 218 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 C6orf132Q5T0Z8 1188 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 LVRNQ6Q4G3 990 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 NAPRTQ6XQN6 538 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 AMZ2Q86W34 360 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 LMNTD2Q8IXW0 634 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 SDR16C5Q8N3Y7 309 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 LILRA3Q8N6C8 439 aaPredicted RBP12.98□□□□□ -0.33
GTF3A-209ENST00000640289 KYQ8NBH2 561 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 LKAAEAR1Q8TD35 194 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 CALML6Q8TD86 181 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 ZDHHC1Q8WTX9 485 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 PATE1Q8WXA2 126 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 CNDP2Q96KP4 475 aaKnown RBP12.98□□□□□ -0.33
GTF3A-209ENST00000640289 LINC00615Q96LM1 132 aaPredicted RBP12.98□□□□□ -0.33
GTF3A-209ENST00000640289 APOLD1Q96LR9 279 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 DUSP23Q9BVJ7 150 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 LRRC4CQ9HCJ2 640 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 PRDM8Q9NQV8 689 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 MOCS1Q9NZB8 636 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 TBC1D29Q9UFV1 150 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 FBXO5Q9UKT4 447 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 CRYL1Q9Y2S2 319 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 DNMT3AQ9Y6K1 912 aaPredicted RBP12.98□□□□□ -0.33
GTF3A-209ENST00000640289 U3KQA8 63 aa12.98□□□□□ -0.33
GTF3A-209ENST00000640289 TRBV23OR9-2A0A075B6M9 112 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 DCDC2BA2VCK2 349 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 MGAT4DA6NG13 374 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 GIPC1O14908 333 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 NOBOXO60393 691 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 HAUS5O94927 633 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 LDOC1O95751 146 aaPredicted RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 OR56A5P0C7T3 313 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 RPS3P23396 243 aaKnown RBP eCLIP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 RPL10P27635 214 aaKnown RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 GABRB3P28472 473 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 ABCG1P45844 678 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 CLCNKAP51800 687 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 DNAJC3Q13217 504 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 FRG1Q14331 258 aaKnown RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 KYNUQ16719 465 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 PROX2Q3B8N5 592 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 ZNF658BQ4V348 819 aaPredicted RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 TEDDM1Q5T9Z0 273 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 RNF187Q5TA31 235 aaPredicted RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 ZCCHC8Q6NZY4 707 aaKnown RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 C3orf62Q6ZUJ4 267 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 CNTN4Q8IWV2 1026 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 SLC35F3Q8IY50 421 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 NAGSQ8N159 534 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 KRT222Q8N1A0 295 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 C2CD4AQ8NCU7 369 aaPredicted RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 OR2L2Q8NH16 312 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 SCG3Q8WXD2 468 aaKnown RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 BIRC8Q96P09 236 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 TCF12Q99081 682 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 CCM2Q9BSQ5 444 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 RTKNQ9BST9 563 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 CDC42EP4Q9H3Q1 356 aaKnown RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 VPS37BQ9H9H4 285 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 RRAGDQ9NQL2 400 aaPredicted RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 SMYD2Q9NRG4 433 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 NINJ2Q9NZG7 142 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 SCHIP1Q9P0W5 487 aaPredicted RBP12.97□□□□□ -0.33
GTF3A-209ENST00000640289 FTSJ1Q9UET6 329 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 FRYLO94915 3013 aa12.97□□□□□ -0.33
GTF3A-209ENST00000640289 TCRBV9S1A1TA0A576 114 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 A6NCN8 305 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 PDZK1P1A8MUH7 402 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 PFDN6O15212 129 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 TRIM16O95361 564 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 FAM153BP0C7A2 387 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 VCLP18206 1134 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 CSRP1P21291 193 aaKnown RBP12.96□□□□□ -0.33
GTF3A-209ENST00000640289 IDSP22304 550 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 LEPRP48357 1165 aaKnown RBP12.96□□□□□ -0.33
GTF3A-209ENST00000640289 MAZP56270 477 aaKnown RBP12.96□□□□□ -0.33
GTF3A-209ENST00000640289 DMPKQ09013 629 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 MGAT5Q09328 741 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 BRD3Q15059 726 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 FAM153CQ494X1 144 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 PTRHD1Q6GMV3 140 aaKnown RBP12.96□□□□□ -0.33
GTF3A-209ENST00000640289 CNSTQ6PJW8 725 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 OGFOD3Q6PK18 319 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 SPNS2Q8IVW8 549 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 CFAP206Q8IYR0 622 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 ARL10Q8N8L6 244 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 FAM181AQ8N9Y4 354 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 GPR156Q8NFN8 814 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 SLC32A1Q9H598 525 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 INTS10Q9NVR2 710 aaKnown RBP12.96□□□□□ -0.33
GTF3A-209ENST00000640289 DLL3Q9NYJ7 618 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 ZFATQ9P243 1243 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 GNPTGQ9UJJ9 305 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms