RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SQLEQ14534 574 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 HKDC1Q2TB90 917 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MTMR14Q8NCE2 650 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CHST4Q8NCG5 386 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 FCRL2Q96LA5 508 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CHP1Q99653 195 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ACBD6Q9BR61 282 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 NUAK2Q9H093 628 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CRISPLD1Q9H336 500 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 FAM124BQ9H5Z6 455 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MAU2Q9Y6X3 613 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 TRIP11Q15643 1979 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CDC40O60508 579 aaKnown RBP eCLIP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CLDN9O95484 217 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CYP3A4P08684 503 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 PPP3CAQ08209 521 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 GRM2Q14416 872 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 GXYLT1Q4G148 440 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 TMEM220Q6QAJ8 160 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 DHRSXQ8N5I4 330 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CLEC1AQ8NC01 280 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 BPIFB1Q8TDL5 484 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 GPR151Q8TDV0 419 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 KLK6Q92876 244 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 FUBP3Q96I24 572 aaKnown RBP eCLIP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CPQQ9Y646 472 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 FMN2Q9NZ56 1722 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 E9PAM4 449 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 SLC33A1O00400 549 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 PI15O43692 258 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CCNOP22674 350 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 VHLP40337 213 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CPSF6Q16630 551 aaKnown RBP eCLIP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MOB2Q70IA6 237 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ZNF100Q8IYN0 542 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ARL14EPQ8N8R7 260 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 PIGXQ8TBF5 258 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ATG4AQ8WYN0 398 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 BAP1Q92560 729 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ZBED6CLQ96FA7 236 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 DCBLD2Q96PD2 775 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 FCRL4Q96PJ5 515 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MAGEH1Q9H213 219 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 SSR3Q9UNL2 185 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MYH4Q9Y623 1939 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CIB4A0PJX0 185 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 FTCDNL1E5RQL4 147 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CYB5BO43169 146 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 KAT7O95251 611 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 HOXA10P31260 410 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 SLC5A3P53794 718 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 C2orf80Q0P641 193 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 DECR1Q16698 335 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PIGZQ86VD9 579 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MMAAQ8IVH4 418 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ASPNQ9BXN1 380 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 NXF3Q9H4D5 531 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ALG2Q9H553 416 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 GPN1Q9HCN4 374 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ADGRE2Q9UHX3 823 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ZNF180Q9UJW8 692 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 FBXO9Q9UK97 447 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 DGKBQ9Y6T7 804 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 A0A0G2JLL6 359 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 OR2AG2A6NM03 316 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 HCN1O60741 890 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 LRATO95237 230 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ZNF37AP17032 561 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TUBB3Q13509 450 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 SLC1A5Q15758 541 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CRY2Q49AN0 593 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PDCD4Q53EL6 469 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 POTEHQ6S545 545 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PRRT2Q7Z6L0 340 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 LRRTM4Q86VH4 590 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ECHDC2Q86YB7 292 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 FAM129BQ96TA1 746 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ZSCAN5AQ9BUG6 496 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PNPLA8Q9NP80 782 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 FBXO6Q9NRD1 293 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ETNK2Q9NVF9 386 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 G3V2T6 193 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 RPP40O75818 363 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TACR2P21452 398 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MSX1P28360 303 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 EIF2S3P41091 472 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 KLK7P49862 253 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TMBIM6P55061 237 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 RPS21P63220 83 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 RCAN2Q14206 197 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 C4orf46Q504U0 113 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 HGSNATQ68CP4 663 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 BRAT1Q6PJG6 821 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 GPAT4Q86UL3 456 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 SH3RF2Q8TEC5 729 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 COX4I2Q96KJ9 171 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MAP3K3Q99759 626 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 P2RY13Q9BPV8 354 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 GTF2IRD1Q9UHL9 959 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms