RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ATMQ13315 3056 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 TENM4Q6N022 2769 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 CCDC162PA2VCL2 907 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 OR51F1A6NGY5 319 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 CDRT15L2A8MXV6 281 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 B4DGG1 531 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 GPR89AB7ZAQ6 455 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 H7C0S8 307 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 GRID2O43424 1007 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 NUAK1O60285 661 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 DNAJC6O75061 913 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 FUCA1P04066 466 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 GPR89BP0CG08 455 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 ACP5P13686 325 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 ACTR1BP42025 376 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 ACTR1AP61163 376 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 CACNG1Q06432 222 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 SPIDRQ14159 915 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 SLC30A9Q6PML9 568 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 DET1Q7L5Y6 550 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 CHST15Q7LFX5 561 aaPredicted RBP17.55■□□□□ 0.4
CLN3-247ENST00000636351 CAND1Q86VP6 1230 aaKnown RBP17.55■□□□□ 0.4
CLN3-247ENST00000636351 MPP5Q8N3R9 675 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 ARL14Q8N4G2 192 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 OTUD6BQ8N6M0 293 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 MNS1Q8NEH6 495 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 CCL4L1Q8NHW4 92 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 WDR36Q8NI36 951 aaKnown RBP17.55■□□□□ 0.4
CLN3-247ENST00000636351 WDR48Q8TAF3 677 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 SNRNP27Q8WVK2 155 aaKnown RBP17.55■□□□□ 0.4
CLN3-247ENST00000636351 TTC9Q92623 222 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 SCARF2Q96GP6 870 aaPredicted RBP17.55■□□□□ 0.4
CLN3-247ENST00000636351 ZNF778Q96MU6 729 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 DPH5Q9H2P9 285 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 TRNAU1APQ9NX07 287 aaKnown RBP17.55■□□□□ 0.4
CLN3-247ENST00000636351 RIMKLBQ9ULI2 386 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 PADI4Q9UM07 663 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 GPR34Q9UPC5 381 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 MAD1L1Q9Y6D9 718 aa17.55■□□□□ 0.4
CLN3-247ENST00000636351 CCDC187A0A096LP49 1063 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 CFAP99D6REC4 459 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 J3QKU1 62 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 NDC80O14777 642 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 SEC31AO94979 1220 aaKnown RBP17.54■□□□□ 0.4
CLN3-247ENST00000636351 TNFSF15O95150 251 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 GOT2P00505 430 aaKnown RBP17.54■□□□□ 0.4
CLN3-247ENST00000636351 PRSS56P0CW18 603 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 RALBP11234 206 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 AK4P27144 223 aaPredicted RBP17.54■□□□□ 0.4
CLN3-247ENST00000636351 CA5AP35218 305 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 ITGA8P53708 1063 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 CTBSQ01459 385 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 TMEM115Q12893 351 aaPredicted RBP17.54■□□□□ 0.4
CLN3-247ENST00000636351 MORF4L2Q15014 288 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 INSCQ1MX18 579 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 GPR33Q49SQ1 333 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 DNAJC21Q5F1R6 531 aaKnown RBP17.54■□□□□ 0.4
CLN3-247ENST00000636351 C8orf74Q6P047 294 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 CES3Q6UWW8 571 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 LRRTM4Q86VH4 590 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 NXPE1Q8N323 547 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 SDR16C5Q8N3Y7 309 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 FAM46DQ8NEK8 389 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 CCDC97Q96F63 343 aaPredicted RBP17.54■□□□□ 0.4
CLN3-247ENST00000636351 COPS8Q99627 209 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 DPEP2Q9H4A9 486 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 MRM3Q9HC36 420 aaKnown RBP17.54■□□□□ 0.4
CLN3-247ENST00000636351 GULP1Q9UBP9 304 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 SOX13Q9UN79 622 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 SNX24Q9Y343 169 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 UTP11Q9Y3A2 253 aaKnown RBP17.54■□□□□ 0.4
CLN3-247ENST00000636351 PLEKHM1Q9Y4G2 1056 aa17.54■□□□□ 0.4
CLN3-247ENST00000636351 PCYT1BQ9Y5K3 369 aaPredicted RBP17.54■□□□□ 0.4
CLN3-247ENST00000636351 SDR42E2A6NKP2 422 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 K7ENP7 123 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 KMOO15229 486 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 PAMP19021 973 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 ACRV1P26436 265 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 NMBRP28336 390 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 RPL21P46778 160 aaKnown RBP17.53■□□□□ 0.4
CLN3-247ENST00000636351 CDKN1CP49918 316 aaPredicted RBP17.53■□□□□ 0.4
CLN3-247ENST00000636351 CALCOCO2Q13137 446 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 LRP8Q14114 963 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 KIAA1614Q5VZ46 1190 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 INO80CQ6PI98 192 aaPredicted RBP17.53■□□□□ 0.4
CLN3-247ENST00000636351 LVRNQ6Q4G3 990 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 CLEC14AQ86T13 490 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 SERPINA9Q86WD7 417 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 ARL10Q8N8L6 244 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 KYQ8NBH2 561 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 GPBAR1Q8TDU6 330 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 PEX13Q92968 403 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 TTC1Q99614 292 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 KIFC1Q9BW19 673 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 RAB17Q9H0T7 212 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 OSGEPL1Q9H4B0 414 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 TAAR2Q9P1P5 351 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 ANAPC5Q9UJX4 755 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 KCNK6Q9Y257 313 aa17.53■□□□□ 0.4
CLN3-247ENST00000636351 CTAGE15A4D2H0 777 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms