RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 GOLGA8TH3BQL2 631 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 ZNF500O60304 480 aaPredicted RBP19.95■□□□□ 0.78
PTCD3-220ENST00000627371 OR1I1O60431 355 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 SNX2O60749 519 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 CDK4P11802 303 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 F3P13726 295 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 SLC2A4P14672 509 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 PBLDP30039 288 aaPredicted RBP19.95■□□□□ 0.78
PTCD3-220ENST00000627371 ELK3P41970 407 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 MAZP56270 477 aaKnown RBP19.95■□□□□ 0.78
PTCD3-220ENST00000627371 CAV1Q03135 178 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 CRYMQ14894 314 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 LONRF1Q17RB8 773 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 TYSND1Q2T9J0 566 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 LDB1Q86U70 411 aaPredicted RBP19.95■□□□□ 0.78
PTCD3-220ENST00000627371 IGDCC3Q8IVU1 814 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 OTUD6BQ8N6M0 293 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.95■□□□□ 0.78
PTCD3-220ENST00000627371 OR2L2Q8NH16 312 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 SEC14L1Q92503 715 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 ART4Q93070 314 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 WDR83Q9BRX9 315 aaKnown RBP19.95■□□□□ 0.78
PTCD3-220ENST00000627371 VPS37BQ9H9H4 285 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 IL1RAPL1Q9NZN1 696 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 TEX264Q9Y6I9 313 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 PRSS21Q9Y6M0 314 aa19.95■□□□□ 0.78
PTCD3-220ENST00000627371 NUDT21O43809 227 aaKnown RBP19.94■□□□□ 0.78
PTCD3-220ENST00000627371 TRIM16O95361 564 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 GLB1P16278 677 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 OGNP20774 298 aaKnown RBP19.94■□□□□ 0.78
PTCD3-220ENST00000627371 IDSP22304 550 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 PMLP29590 882 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 NFE2L1Q14494 772 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 SMAD1Q15797 465 aaKnown RBP19.94■□□□□ 0.78
PTCD3-220ENST00000627371 GLE1Q53GS7 698 aaKnown RBP19.94■□□□□ 0.78
PTCD3-220ENST00000627371 CCDC157Q569K6 752 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 SPANXN3Q5MJ09 141 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 NEPROQ6NW34 567 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 IYDQ6PHW0 289 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 WASH2PQ6VEQ5 465 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 SDCCAG8Q86SQ7 713 aaPredicted RBP19.94■□□□□ 0.78
PTCD3-220ENST00000627371 SFRP1Q8N474 314 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 ARL14Q8N4G2 192 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 HM13Q8TCT9 377 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 MAPK15Q8TD08 544 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 SLC37A2Q8TED4 501 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 ADAMTS14Q8WXS8 1223 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 CARD6Q9BX69 1037 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 WASH6PQ9NQA3 447 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 PRDM8Q9NQV8 689 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 CHMP2BQ9UQN3 213 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 COL27A1Q8IZC6 1860 aaPredicted RBP19.94■□□□□ 0.78
PTCD3-220ENST00000627371 UNC13CQ8NB66 2214 aa19.94■□□□□ 0.78
PTCD3-220ENST00000627371 KIR2DS5A0A0G2JLQ3 304 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 A0A0G2JNG1 304 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 C17orf113A0A1B0GUU1 675 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 OR5K4A6NMS3 321 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 KIR2DS3K7RE56 304 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 GSTM1P09488 218 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 FASLGP48023 281 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 GSTM4Q03013 218 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 PDIA2Q13087 525 aaKnown RBP19.93■□□□□ 0.78
PTCD3-220ENST00000627371 THOC5Q13769 683 aaKnown RBP19.93■□□□□ 0.78
PTCD3-220ENST00000627371 KIR2DS5Q14953 304 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 TRADDQ15628 312 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 SEPT7Q16181 437 aaKnown RBP19.93■□□□□ 0.78
PTCD3-220ENST00000627371 HP1BP3Q5SSJ5 553 aaPredicted RBP19.93■□□□□ 0.78
PTCD3-220ENST00000627371 PERM1Q5SV97 790 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 RNF187Q5TA31 235 aaPredicted RBP19.93■□□□□ 0.78
PTCD3-220ENST00000627371 AGAP9Q5VTM2 703 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 METRNLQ641Q3 311 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 ABRAXAS1Q6UWZ7 409 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 FAM83HQ6ZRV2 1179 aaPredicted RBP19.93■□□□□ 0.78
PTCD3-220ENST00000627371 CENPUQ71F23 418 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 CILP2Q8IUL8 1156 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 LMNTD2Q8IXW0 634 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 FBXO25Q8TCJ0 367 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 CCDC74AQ96AQ1 378 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 TCF12Q99081 682 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 CCM2Q9BSQ5 444 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 C20orf96Q9NUD7 363 aaPredicted RBP19.93■□□□□ 0.78
PTCD3-220ENST00000627371 ZC3H7BQ9UGR2 993 aaKnown RBP19.93■□□□□ 0.78
PTCD3-220ENST00000627371 RNF215Q9Y6U7 377 aa19.93■□□□□ 0.78
PTCD3-220ENST00000627371 ESYT3A0FGR9 886 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 PDZK1P1A8MUH7 402 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 BHMG1C9JSJ3 638 aaPredicted RBP19.92■□□□□ 0.78
PTCD3-220ENST00000627371 F8W8V4 182 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 PRMT5O14744 637 aaPredicted RBP19.92■□□□□ 0.78
PTCD3-220ENST00000627371 PFDN6O15212 129 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 EIF3HO15372 352 aaKnown RBP eCLIP19.92■□□□□ 0.78
PTCD3-220ENST00000627371 NDUFS3O75489 264 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 FTH1P02794 183 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 ADRB1P08588 477 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 OR56A5P0C7T3 313 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 BRAFP15056 766 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 PNLIPP16233 465 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 RPS3P23396 243 aaKnown RBP eCLIP19.92■□□□□ 0.781e-6■■□□□ 12.1
PTCD3-220ENST00000627371 RPL10P27635 214 aaKnown RBP19.92■□□□□ 0.78
PTCD3-220ENST00000627371 PLTPP55058 493 aa19.92■□□□□ 0.78
PTCD3-220ENST00000627371 E2F1Q01094 437 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms