RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 RPF2Q9H7B2 306 aaKnown RBP8.82□□□□□ -1
VCL-206ENST00000623461 ZDHHC7Q9NXF8 308 aa8.82□□□□□ -1
VCL-206ENST00000623461 TCAF1Q9Y4C2 921 aa8.82□□□□□ -1
VCL-206ENST00000623461 HSPB11Q9Y547 144 aa8.82□□□□□ -1
VCL-206ENST00000623461 OAS3Q9Y6K5 1087 aaKnown RBP8.82□□□□□ -1
VCL-206ENST00000623461 GABARAPL2P60520 117 aa8.82□□□□□ -1
VCL-206ENST00000623461 BCL2L1Q07817 233 aa8.82□□□□□ -1
VCL-206ENST00000623461 PTGES3Q15185 160 aaKnown RBP8.82□□□□□ -1
VCL-206ENST00000623461 LCLAT1Q6UWP7 414 aa8.82□□□□□ -1
VCL-206ENST00000623461 ZNF767PQ75MW2 155 aa8.82□□□□□ -1
VCL-206ENST00000623461 SLC30A8Q8IWU4 369 aa8.82□□□□□ -1
VCL-206ENST00000623461 COL21A1Q96P44 957 aa8.82□□□□□ -1
VCL-206ENST00000623461 OR52B2Q96RD2 323 aa8.82□□□□□ -1
VCL-206ENST00000623461 TBC1D24Q9ULP9 559 aa8.82□□□□□ -1
VCL-206ENST00000623461 RNF6Q9Y252 685 aa8.82□□□□□ -1
VCL-206ENST00000623461 MYH10P35580 1976 aa8.82□□□□□ -1
VCL-206ENST00000623461 C12orf71A8MTZ7 269 aa8.82□□□□□ -1
VCL-206ENST00000623461 TMEM63AO94886 807 aa8.82□□□□□ -1
VCL-206ENST00000623461 KDM4BO94953 1096 aa8.82□□□□□ -1
VCL-206ENST00000623461 RASAL1O95294 804 aa8.82□□□□□ -1
VCL-206ENST00000623461 OXSR1O95747 527 aaPredicted RBP8.82□□□□□ -1
VCL-206ENST00000623461 IGSF6O95976 241 aa8.82□□□□□ -1
VCL-206ENST00000623461 WNT3AP56704 352 aa8.82□□□□□ -1
VCL-206ENST00000623461 ARHGAP15Q53QZ3 475 aa8.82□□□□□ -1
VCL-206ENST00000623461 INTS5Q6P9B9 1019 aaKnown RBP8.82□□□□□ -1
VCL-206ENST00000623461 PGBD3Q8N328 593 aa8.82□□□□□ -1
VCL-206ENST00000623461 TRPM4Q8TD43 1214 aa8.82□□□□□ -1
VCL-206ENST00000623461 SLC45A3Q96JT2 553 aa8.82□□□□□ -1
VCL-206ENST00000623461 ZYG11BQ9C0D3 744 aa8.82□□□□□ -1
VCL-206ENST00000623461 TLE6Q9H808 572 aa8.82□□□□□ -1
VCL-206ENST00000623461 RSL1D1O76021 490 aaKnown RBP8.82□□□□□ -1
VCL-206ENST00000623461 CRYZL1O95825 349 aa8.82□□□□□ -1
VCL-206ENST00000623461 IFNW1P05000 195 aa8.82□□□□□ -1
VCL-206ENST00000623461 MNDAP41218 407 aa8.82□□□□□ -1
VCL-206ENST00000623461 MRPS5P82675 430 aaKnown RBP8.82□□□□□ -1
VCL-206ENST00000623461 DET1Q7L5Y6 550 aa8.82□□□□□ -1
VCL-206ENST00000623461 TMEM17Q86X19 198 aa8.82□□□□□ -1
VCL-206ENST00000623461 ZIM2Q9NZV7 527 aa8.82□□□□□ -1
VCL-206ENST00000623461 TRPS1Q9UHF7 1281 aa8.82□□□□□ -1
VCL-206ENST00000623461 KCNE2Q9Y6J6 123 aa8.82□□□□□ -1
VCL-206ENST00000623461 SPATA31A6Q5VVP1 1343 aa8.82□□□□□ -1
VCL-206ENST00000623461 NPEPPSL1A6NEC2 478 aa8.81□□□□□ -1
VCL-206ENST00000623461 PITRM1Q5JRX3 1037 aa8.81□□□□□ -1
VCL-206ENST00000623461 SCML4Q8N228 414 aa8.81□□□□□ -1
VCL-206ENST00000623461 LSM14AQ8ND56 463 aaKnown RBP8.81□□□□□ -1
VCL-206ENST00000623461 PPCDCQ96CD2 204 aa8.81□□□□□ -1
VCL-206ENST00000623461 ZNF285Q96NJ3 590 aa8.81□□□□□ -1
VCL-206ENST00000623461 MAGEB3O15480 346 aa8.81□□□□□ -1
VCL-206ENST00000623461 PTTG1O95997 202 aa8.81□□□□□ -1
VCL-206ENST00000623461 IMPDH1P20839 514 aa8.81□□□□□ -1
VCL-206ENST00000623461 RFX3P48380 749 aa8.81□□□□□ -1
VCL-206ENST00000623461 HLCSP50747 726 aa8.81□□□□□ -1
VCL-206ENST00000623461 AP1S2P56377 157 aa8.81□□□□□ -1
VCL-206ENST00000623461 TAS2R41P59536 307 aa8.81□□□□□ -1
VCL-206ENST00000623461 ERVK-8P63133 956 aa8.81□□□□□ -1
VCL-206ENST00000623461 ZNF267Q14586 743 aaPredicted RBP8.81□□□□□ -1
VCL-206ENST00000623461 IFI44LQ53G44 452 aa8.81□□□□□ -1
VCL-206ENST00000623461 BRMS1LQ5PSV4 323 aa8.81□□□□□ -1
VCL-206ENST00000623461 ANKFN1Q8N957 763 aa8.81□□□□□ -1
VCL-206ENST00000623461 C15orf40Q8WUR7 153 aa8.81□□□□□ -1
VCL-206ENST00000623461 POF1BQ8WVV4 589 aa8.81□□□□□ -1
VCL-206ENST00000623461 SLC13A3Q8WWT9 602 aa8.81□□□□□ -1
VCL-206ENST00000623461 POLR2J2Q9GZM3 115 aaKnown RBP8.81□□□□□ -1
VCL-206ENST00000623461 CHRAC1Q9NRG0 131 aa8.81□□□□□ -1
VCL-206ENST00000623461 UCKL1Q9NWZ5 548 aa8.81□□□□□ -1
VCL-206ENST00000623461 RAB23Q9ULC3 237 aa8.81□□□□□ -1
VCL-206ENST00000623461 KANTRA0A1W2PQU2 76 aa8.81□□□□□ -1
VCL-206ENST00000623461 PTPN9P43378 593 aa8.81□□□□□ -1
VCL-206ENST00000623461 GDF10P55107 478 aa8.81□□□□□ -1
VCL-206ENST00000623461 GPR158Q5T848 1215 aa8.81□□□□□ -1
VCL-206ENST00000623461 ZNF467Q7Z7K2 595 aaPredicted RBP8.81□□□□□ -1
VCL-206ENST00000623461 MKS1Q9NXB0 559 aa8.81□□□□□ -1
VCL-206ENST00000623461 TEX264Q9Y6I9 313 aa8.81□□□□□ -1
VCL-206ENST00000623461 ACADLP28330 430 aa8.81□□□□□ -1
VCL-206ENST00000623461 GPAT3Q53EU6 434 aa8.81□□□□□ -1
VCL-206ENST00000623461 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.81□□□□□ -1
VCL-206ENST00000623461 FAM91A1Q658Y4 838 aa8.81□□□□□ -1
VCL-206ENST00000623461 SLC30A10Q6XR72 485 aa8.81□□□□□ -1
VCL-206ENST00000623461 C12orf66Q96MD2 445 aa8.81□□□□□ -1
VCL-206ENST00000623461 HNRNPABQ99729 332 aaKnown RBP8.81□□□□□ -1
VCL-206ENST00000623461 CCDC32Q9BV29 185 aa8.81□□□□□ -1
VCL-206ENST00000623461 NFKBIZQ9BYH8 718 aa8.81□□□□□ -1
VCL-206ENST00000623461 ASB8Q9H765 288 aa8.81□□□□□ -1
VCL-206ENST00000623461 COMMD3Q9UBI1 195 aa8.81□□□□□ -1
VCL-206ENST00000623461 VPS51Q9UID3 782 aa8.81□□□□□ -1
VCL-206ENST00000623461 TEX46H3BTG2 121 aa8.81□□□□□ -1
VCL-206ENST00000623461 SMIM22K7EJ46 135 aa8.81□□□□□ -1
VCL-206ENST00000623461 MAPK8P45983 427 aa8.81□□□□□ -1
VCL-206ENST00000623461 EFR3AQ14156 821 aa8.81□□□□□ -1
VCL-206ENST00000623461 XKR6Q5GH73 641 aa8.81□□□□□ -1
VCL-206ENST00000623461 CHST15Q7LFX5 561 aaPredicted RBP8.81□□□□□ -1
VCL-206ENST00000623461 UBE2J2Q8N2K1 259 aa8.81□□□□□ -1
VCL-206ENST00000623461 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.81□□□□□ -1
VCL-206ENST00000623461 LINC00116Q8NCU8 138 aa8.81□□□□□ -1
VCL-206ENST00000623461 CD93Q9NPY3 652 aa8.81□□□□□ -1
VCL-206ENST00000623461 B3GNT3Q9Y2A9 372 aa8.81□□□□□ -1
VCL-206ENST00000623461 POFUT2Q9Y2G5 429 aa8.81□□□□□ -1
VCL-206ENST00000623461 PCDHB5Q9Y5E4 795 aa8.81□□□□□ -1
VCL-206ENST00000623461 ERN1O75460 977 aaKnown RBP8.81□□□□□ -1
VCL-206ENST00000623461 TRBC1P01850 177 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms