RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 GHRHRQ02643 423 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 VPS26BQ4G0F5 336 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 TTC23Q5W5X9 447 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ISLR2Q6UXK2 745 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 CXXC5Q7LFL8 322 aaKnown RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 TMEM192Q8IY95 271 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ZCCHC7Q8N3Z6 543 aaKnown RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ZMIZ2Q8NF64 920 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 UBASH3BQ8TF42 649 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 POF1BQ8WVV4 589 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 HIC2Q96JB3 615 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 OSBPL2Q9H1P3 480 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 CLEC4MQ9H2X3 399 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 SUV39H2Q9H5I1 410 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 CMTM6Q9NX76 183 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 EGFL7Q9UHF1 273 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 SAMD4AQ9UPU9 718 aaKnown RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 R3HDM2Q9Y2K5 976 aaKnown RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 PNMA8CA0A1B0GUJ8 204 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 CLUP10909 449 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PTGER3P43115 390 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 SLC11A1P49279 550 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PLGLB1Q02325 96 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF776Q68DI1 518 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 ATCAYQ86WG3 371 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PIK3C3Q8NEB9 887 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PRICKLE1Q96MT3 831 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 SLC17A7Q9P2U7 560 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 WNT6Q9Y6F9 365 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 A8MU76 341 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 TMEM150CB9EJG8 249 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 H7C0S8 307 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 CRHR1P34998 444 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 DRG2P55039 364 aaKnown RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 HNRNPDQ14103 355 aaKnown RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 ZBTB6Q15916 424 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 AAK1Q2M2I8 961 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 SNX20Q7Z614 316 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 LMX1AQ8TE12 382 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PIH1D2Q8WWB5 315 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 TXNRD2Q9NNW7 524 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 MAGEL2Q9UJ55 1249 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 BPGMP07738 259 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 HOXB2P14652 356 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 STAT5AP42229 794 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PDX1P52945 283 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 LBX1P52954 281 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 CLCQ05315 142 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PTGES3Q15185 160 aaKnown RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 OR2T12Q8NG77 320 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 TRNT1Q96Q11 434 aaKnown RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 HAPLN3Q96S86 360 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 RIOK2Q9BVS4 552 aaKnown RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 SPATA9Q9BWV2 254 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 NUAK2Q9H093 628 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 EHD3Q9NZN3 535 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 MRPS7Q9Y2R9 242 aaKnown RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 TSC22D4Q9Y3Q8 395 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 A0A087WXM4 84 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 RNF43Q68DV7 783 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 ABHD13Q7L211 337 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 TRAPPC9Q96Q05 1148 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 GPER1Q99527 375 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 BCO2Q9BYV7 579 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 ERVK-5Q9HDB9 667 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 FBXL12Q9NXK8 326 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 CNTN3Q9P232 1028 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 CORO1CQ9ULV4 474 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 ATRNL1Q5VV63 1379 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 GATMP50440 423 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PLA2G16P53816 162 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 JAM2P57087 298 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PRR5P85299 388 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 CAMK1Q14012 370 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF792Q3KQV3 632 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 CCDC92Q53HC0 331 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 WDR45BQ5MNZ6 344 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 ADGRF1Q5T601 910 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 ZYG11AQ6WRX3 759 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 FBXW8Q8N3Y1 598 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 Q8N9G6 341 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-219ENST00000620786 KXD1Q9BQD3 176 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 LRRC4CQ9HCJ2 640 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 CREBZFQ9NS37 354 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 IKZF2Q9UKS7 526 aa11.25□□□□□ -0.61
CLIP1-219ENST00000620786 PSMD11O00231 422 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 HNRNPH3P31942 346 aaKnown RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 RGS8P57771 180 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 C1QTNF8P60827 252 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF662Q6ZS27 426 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 CPNE9Q8IYJ1 553 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 LIX1Q8N485 282 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 SLC44A1Q8WWI5 657 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 FCRL4Q96PJ5 515 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 ARHGAP9Q9BRR9 750 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 TDRD1Q9BXT4 1180 aaKnown RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 ANKHQ9HCJ1 492 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 TDP1Q9NUW8 608 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 DHRS12A0PJE2 317 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 VNN1O95497 513 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms