RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ESRRBO95718 433 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 PAK4O96013 591 aaPredicted RBP15.52■□□□□ 0.07
CPSF1-213ENST00000620219 GSRP00390 522 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 ARRB2P32121 409 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 CAMK1Q14012 370 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 ZNF707Q96C28 371 aaPredicted RBP15.52■□□□□ 0.07
CPSF1-213ENST00000620219 CHFRQ96EP1 664 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 SLC2A11Q9BYW1 496 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 IPPKQ9H8X2 491 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 MKS1Q9NXB0 559 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 ASF1AQ9Y294 204 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 NCKAP1Q9Y2A7 1128 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 TMEM98Q9Y2Y6 226 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 RECQL5O94762 991 aaPredicted RBP15.52■□□□□ 0.07
CPSF1-213ENST00000620219 OLFM2O95897 454 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 HOXA9P31269 272 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 OR4D1Q15615 310 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 TECRLQ5HYJ1 363 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 C12orf40Q86WS4 652 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 PHYKPLQ8IUZ5 450 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 SKA1Q96BD8 255 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 PTERQ96BW5 349 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 SORT1Q99523 831 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 ARHGEF3Q9NR81 526 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 GDE1Q9NZC3 331 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 NOP53Q9NZM5 478 aaKnown RBP15.52■□□□□ 0.07
CPSF1-213ENST00000620219 GPSM3Q9Y4H4 160 aa15.52■□□□□ 0.07
CPSF1-213ENST00000620219 A0A1W2PP55 124 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 GSC2O15499 205 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 ANP32DO95626 131 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 GJA4P35212 333 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 PREPP48147 710 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 ZNF549Q6P9A3 640 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 PARM1Q6UWI2 310 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 MBOAT1Q6ZNC8 495 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 LENG8Q96PV6 779 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 TUBGCP5Q96RT8 1024 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 DENND2DQ9H6A0 471 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 HS3ST2Q9Y278 367 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 SNNO75324 88 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 CD1DP15813 335 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 IRF8Q02556 426 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 DNAJC14Q6Y2X3 702 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 TMPRSS6Q8IU80 811 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 SLC7A6OSQ96CW6 309 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 MRPL38Q96DV4 380 aaKnown RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 FBXL12Q9NXK8 326 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 CFAP20Q9Y6A4 193 aaKnown RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 IFRD1O00458 451 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 SEC22BO75396 215 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 JUNP05412 331 aaKnown RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 PFKLP17858 780 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 KCNK10P57789 538 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 MAPRE2Q15555 327 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 TBCCQ15814 346 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 ATP6AP1LQ52LC2 224 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 CHST15Q7LFX5 561 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 ISCA2Q86U28 154 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 TNPO3Q9Y5L0 923 aaKnown RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 PRRT4C9JH25 899 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 H3BM21 787 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 FFAR2O15552 330 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 HNRNPCL1O60812 293 aaKnown RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 SPINT3P49223 89 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 NAA25Q14CX7 972 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 SZRD1Q7Z422 152 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 HSD11B1LQ7Z5J1 315 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 PEX13Q92968 403 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 NUS1Q96E22 293 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 LRRC3Q9BY71 257 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 TFB2MQ9H5Q4 396 aaKnown RBP15.51■□□□□ 0.07
CPSF1-213ENST00000620219 EFCAB1Q9HAE3 211 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 V9GYQ6 96 aa15.51■□□□□ 0.07
CPSF1-213ENST00000620219 ATG13O75143 517 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 KRT36O76013 467 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 ELAVL3Q14576 367 aaKnown RBP15.5■□□□□ 0.07
CPSF1-213ENST00000620219 TAF11Q15544 211 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 AAK1Q2M2I8 961 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 C11orf96Q7Z7L8 435 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 KCNJ9Q92806 393 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 P2RY13Q9BPV8 354 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 PSMD12O00232 456 aaPredicted RBP15.5■□□□□ 0.07
CPSF1-213ENST00000620219 ATP1B2P14415 290 aaPredicted RBP15.5■□□□□ 0.07
CPSF1-213ENST00000620219 LCA5Q86VQ0 697 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 TWIST2Q8WVJ9 160 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 HMGB4Q8WW32 186 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 SELENOMQ8WWX9 145 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 TRIB3Q96RU7 358 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 IGSF5Q9NSI5 407 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 PTGDR2Q9Y5Y4 395 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 PPP6CO00743 305 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 IMPDH1P20839 514 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 FDXRP22570 491 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 NAE1Q13564 534 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 C18orf21Q32NC0 220 aaPredicted RBP15.5■□□□□ 0.07
CPSF1-213ENST00000620219 C5orf22Q49AR2 442 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 ADIPOR2Q86V24 386 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 CNTN4Q8IWV2 1026 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 RIN3Q8TB24 985 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 SLC30A3Q99726 388 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms