RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ZDHHC3Q9NYG2 299 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 ZNF624Q9P2J8 865 aaPredicted RBP13.26□□□□□ -0.29
LINC00540-202ENST00000616974 CHMP2BQ9UQN3 213 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 RPS6KL1Q9Y6S9 549 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 RFPL3O75679 317 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 ALPPL2P10696 532 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 PREPP48147 710 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 PDX1P52945 283 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 CSE1LP55060 971 aaKnown RBP13.25□□□□□ -0.29
LINC00540-202ENST00000616974 DHX34Q14147 1143 aaKnown RBP13.25□□□□□ -0.29
LINC00540-202ENST00000616974 DUPD1Q68J44 220 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 TRMT10BQ6PF06 316 aaKnown RBP13.25□□□□□ -0.29
LINC00540-202ENST00000616974 C17orf82Q86X59 251 aaPredicted RBP13.25□□□□□ -0.29
LINC00540-202ENST00000616974 GPR150Q8NGU9 434 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 CCDC3Q9BQI4 270 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 ERP44Q9BS26 406 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 CACNA1BQ00975 2339 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 KRT87PA6NCN2 255 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 SDR42E2A6NKP2 422 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 CD3EAPO15446 510 aaKnown RBP13.25□□□□□ -0.29
LINC00540-202ENST00000616974 POLBP06746 335 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 ATP1B2P14415 290 aaPredicted RBP13.25□□□□□ -0.29
LINC00540-202ENST00000616974 PMLP29590 882 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 ELK3P41970 407 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 OR1D5P58170 312 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 CTBP1Q13363 440 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 INAVAQ3KP66 663 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 C14orf28Q4W4Y0 310 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 HES3Q5TGS1 186 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 AFTPHQ6ULP2 937 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 ZDHHC24Q6UX98 284 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 CAPN12Q6ZSI9 719 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 CENPUQ71F23 418 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 RAB44Q7Z6P3 723 aaPredicted RBP13.25□□□□□ -0.29
LINC00540-202ENST00000616974 B3GNT8Q7Z7M8 397 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 TMEM135Q86UB9 458 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 KRT222Q8N1A0 295 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 SFRP1Q8N474 314 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 SNF8Q96H20 258 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 SYNDIG1Q9H7V2 258 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 XAB2Q9HCS7 855 aaKnown RBP13.25□□□□□ -0.29
LINC00540-202ENST00000616974 LRIT1Q9P2V4 623 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 GALPQ9UBC7 116 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 PCDHB1Q9Y5F3 818 aa13.25□□□□□ -0.29
LINC00540-202ENST00000616974 A0A1W2PNU3 283 aaPredicted RBP13.24□□□□□ -0.29
LINC00540-202ENST00000616974 KMOO15229 486 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 B4GAT1O43505 415 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 MPSTP25325 297 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 SLC19A1P41440 591 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 CFHR1Q03591 330 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 NR0B2Q15466 257 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 FBXO25Q8TCJ0 367 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 FOXP3Q9BZS1 431 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 CATSPERZQ9NTU4 200 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 TMEM9Q9P0T7 183 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 PTPRQQ9UMZ3 2332 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 PDZK1P1A8MUH7 402 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 ERVK-10P10266 1014 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 MLNP12872 115 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 PRLHRP49683 370 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 CCL7P80098 99 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 MPP1Q00013 466 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 LRP8Q14114 963 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 GPR33Q49SQ1 333 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 IYDQ6PHW0 289 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 LVRNQ6Q4G3 990 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 AMZ2Q86W34 360 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 VRK3Q8IV63 474 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 ADAMTS14Q8WXS8 1223 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 CFAP36Q96G28 342 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 CARD6Q9BX69 1037 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 TBC1D10AQ9BXI6 508 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 RMI1Q9H9A7 625 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 ANAPC5Q9UJX4 755 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 CRYL1Q9Y2S2 319 aa13.24□□□□□ -0.29
LINC00540-202ENST00000616974 PIEZO2Q9H5I5 2752 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 FAM237BA0A1B0GVD1 139 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 OPA1O60313 960 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 F3P13726 295 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 ALDH4A1P30038 563 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 CLCNKAP51800 687 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 PLTPP55058 493 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 GTF2H3Q13889 308 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 CRYMQ14894 314 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 MORF4L2Q15014 288 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 AMZ1Q400G9 498 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 FASTKD1Q53R41 847 aaKnown RBP13.23□□□□□ -0.29
LINC00540-202ENST00000616974 CTSL3PQ5NE16 218 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 UNC5AQ6ZN44 842 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 USP53Q70EK8 1073 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 HOOK3Q86VS8 718 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 CFAP206Q8IYR0 622 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 LMNTD1Q8N9Z9 388 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 SCG3Q8WXD2 468 aaKnown RBP13.23□□□□□ -0.29
LINC00540-202ENST00000616974 STAMBPL1Q96FJ0 436 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 MRM3Q9HC36 420 aaKnown RBP13.23□□□□□ -0.29
LINC00540-202ENST00000616974 FBXO6Q9NRD1 293 aaPredicted RBP13.23□□□□□ -0.29
LINC00540-202ENST00000616974 SAMD15Q9P1V8 674 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 TSR3Q9UJK0 312 aaKnown RBP13.23□□□□□ -0.29
LINC00540-202ENST00000616974 RIMKLBQ9ULI2 386 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms