RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MGAT4DA6NG13 374 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 IQCF5A8MTL0 148 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 E5RI56 91 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 MAP2K7O14733 419 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 KPNA5O15131 536 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 KCNJ13O60928 360 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 NIPSNAP2O75323 286 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 VPS26AO75436 327 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 POP7O75817 140 aaKnown RBP14.12□□□□□ -0.15
UPF1-211ENST00000600868 RASGRP1O95267 797 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 TRIM16O95361 564 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 CSF2P04141 144 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 NME1P15531 152 aaKnown RBP14.12□□□□□ -0.15
UPF1-211ENST00000600868 CHRM3P20309 590 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 SKIV2L2P42285 1042 aaKnown RBP14.12□□□□□ -0.15
UPF1-211ENST00000600868 GNPDA1P46926 289 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 CDKN2DP55273 166 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 TIAL1Q01085 375 aaKnown RBP eCLIP14.12□□□□□ -0.15
UPF1-211ENST00000600868 BNC1Q01954 994 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 DNAJC3Q13217 504 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 BMPR2Q13873 1038 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 USP10Q14694 798 aaKnown RBP14.12□□□□□ -0.15
UPF1-211ENST00000600868 KIF19Q2TAC6 998 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 ZNF658BQ4V348 819 aaPredicted RBP14.12□□□□□ -0.15
UPF1-211ENST00000600868 CEP85LQ5SZL2 805 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 MROH9Q5TGP6 573 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 UGT3A1Q6NUS8 523 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 CRTC3Q6UUV7 619 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 TIFABQ6ZNK6 161 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 KRT222Q8N1A0 295 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 OXR1Q8N573 874 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 SUMF1Q8NBK3 374 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 ACVR1CQ8NER5 493 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 OR2L2Q8NH16 312 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 ATOH1Q92858 354 aaPredicted RBP14.12□□□□□ -0.15
UPF1-211ENST00000600868 ISL2Q96A47 359 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 TSPAN17Q96FV3 270 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 PDXPQ96GD0 296 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 OLFM1Q99784 485 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 TIMM29Q9BSF4 260 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 CAPN10Q9HC96 672 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 SPATS2LQ9NUQ6 558 aaKnown RBP14.12□□□□□ -0.15
UPF1-211ENST00000600868 TRNAU1APQ9NX07 287 aaKnown RBP14.12□□□□□ -0.15
UPF1-211ENST00000600868 CTNNAL1Q9UBT7 734 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 KLF15Q9UIH9 416 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 SLC39A10Q9ULF5 831 aa14.12□□□□□ -0.15
UPF1-211ENST00000600868 SMIM23A6NLE4 172 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 TRIM49D1C9J1S8 452 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 CFIP05156 583 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 AOAHP28039 575 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 MPLP40238 635 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 NBL1P41271 181 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 CLCN7P51798 805 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 CLCNKAP51800 687 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 SLC12A2P55011 1212 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 TAS2R39P59534 338 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 ARHGAP8P85298 464 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 DMPKQ09013 629 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 LRP8Q14114 963 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 ZKSCAN8Q15776 578 aaPredicted RBP14.11□□□□□ -0.15
UPF1-211ENST00000600868 KRT71Q3SY84 523 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 PLA2G2CQ5R387 149 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 RD3Q7Z3Z2 195 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 AMZ2Q86W34 360 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 PHACTR4Q8IZ21 702 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 LKAAEAR1Q8TD35 194 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 RUFY1Q96T51 708 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 GPR21Q99679 349 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 SLC13A1Q9BZW2 595 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 ZDHHC5Q9C0B5 715 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 ARRDC1-AS1Q9H2J1 176 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 POPDC3Q9HBV1 291 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 DNAJC28Q9NX36 388 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 GULP1Q9UBP9 304 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 TBK1Q9UHD2 729 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 SLC6A14Q9UN76 642 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 DHRS7Q9Y394 339 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 PRKAB1Q9Y478 270 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 GPSM3Q9Y4H4 160 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 SNX11Q9Y5W9 270 aa14.11□□□□□ -0.15
UPF1-211ENST00000600868 CACNA1EQ15878 2313 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 PRR19A6NJB7 356 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 H3BM21 787 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 LIN7AO14910 233 aaPredicted RBP14.1□□□□□ -0.15
UPF1-211ENST00000600868 DFNA5O60443 496 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 ALDOAP04075 364 aaKnown RBP14.1□□□□□ -0.15
UPF1-211ENST00000600868 RETP07949 1114 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 STMN1P16949 149 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 JUNDP17535 347 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 VCLP18206 1134 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 ITGB6P18564 788 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 SAT1P21673 171 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 CRABP2P29373 138 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 CCR7P32248 378 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 PI4KAP42356 2102 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 MAGEA12P43365 314 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 RXRGP48443 463 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 SERPINB8P50452 374 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 CSRP3P50461 194 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 RAB10P61026 200 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms