RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	RPE65	Q16518	533 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	PPP2R5E	Q16537	467 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	TAZ	Q16635	292 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	CERS6	Q6ZMG9	384 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	SPOCD1	Q6ZMY3	1216 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	ZC3H18	Q86VM9	953 aa	Known RBP	10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	AMZ2	Q86W34	360 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	ZNF567	Q8N184	647 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	IPMK	Q8NFU5	416 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	BLOC1S5	Q8TDH9	187 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	CT55	Q8WUE5	264 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	NAT14	Q8WUY8	206 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	ZDHHC12	Q96GR4	267 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	MRGPRX2	Q96LB1	330 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	TTC25	Q96NG3	672 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	SRPK1	Q96SB4	655 aa	Known RBP	10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	IL17C	Q9P0M4	197 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	KLHL8	Q9P2G9	620 aa	Predicted RBP	10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	ANAPC2	Q9UJX6	822 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	KCTD3	Q9Y597	815 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	CFAP20	Q9Y6A4	193 aa	Known RBP	10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	GLYATL1P3	A0A0U1RQE8	302 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	CDC14C	A4D256	554 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	OR2AG2	A6NM03	316 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	CBFA2T2	O43439	604 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	FOLR1	P15328	257 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	NELFE	P18615	380 aa	Known RBP	10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	FECH	P22830	423 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	SLC1A1	P43005	524 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	MARCKSL1	P49006	195 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	NR2C2	P49116	596 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	SRSF1	Q07955	248 aa	Known RBP eCLIP	10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	DMPK	Q09013	629 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	TUBB3	Q13509	450 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	DNASE1L3	Q13609	305 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	TFDP2	Q14188	446 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	NFE2L1	Q14494	772 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	PLCL1	Q15111	1095 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	SLC1A5	Q15758	541 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	CRTC2	Q53ET0	693 aa	Predicted RBP	10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	GPRC6A	Q5T6X5	926 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	PWWP2B	Q6NUJ5	590 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	DUS1L	Q6P1R4	473 aa	Known RBP	10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	TMEM220	Q6QAJ8	160 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	DET1	Q7L5Y6	550 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	GLT6D1	Q7Z4J2	308 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	PPP1R3B	Q86XI6	285 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	VSTM4	Q8IW00	320 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	RBM12B	Q8IXT5	1001 aa	Known RBP	10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	BEND7	Q8N7W2	519 aa	Predicted RBP	10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	DDHD1	Q8NEL9	900 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	RUFY1	Q96T51	708 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	ZCCHC2	Q9C0B9	1178 aa	Known RBP	10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	TRABD	Q9H4I3	376 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	C10orf88	Q9H8K7	445 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	IMP3	Q9NV31	184 aa	Known RBP	10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	FAM8A1	Q9UBU6	413 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	EPHA6	Q9UF33	1036 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	PLAA	Q9Y263	795 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	PCDHB3	Q9Y5E6	796 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	NAV2	Q8IVL1	2488 aa		10.31	□□□□□ -0.76
LSM4-205	ENST00000597776	hCG_1818297	A0A087WSY0	165 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	PIPSL	A2A3N6	862 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	GOLGA6L3	A6NEY3	463 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	PSTPIP1	O43586	416 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	CREG1	O75629	220 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	AGT	P01019	485 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	EPO	P01588	193 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	NTRK1	P04629	796 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	TPM1	P09493	284 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	EBLN1	P0CF75	366 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	AKT1	P31749	480 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	TNNT3	P45378	269 aa	Predicted RBP	10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	ARCN1	P48444	511 aa	Known RBP	10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	RPS18	P62269	152 aa	Known RBP	10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	TCEAL1	Q15170	157 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	LDLRAP1	Q5SW96	308 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	FNBP1L	Q5T0N5	605 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	BZW1	Q7L1Q6	419 aa	Known RBP	10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	PID1	Q7Z2X4	250 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	SIDT2	Q8NBJ9	832 aa	Known RBP	10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	BRSK1	Q8TDC3	778 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	UBXN4	Q92575	508 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	P3H4	Q92791	437 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	SLC41A2	Q96JW4	573 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	QKI	Q96PU8	341 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	FCRL5	Q96RD9	977 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	MAP3K3	Q99759	626 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	TWSG1	Q9GZX9	223 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	RAB33B	Q9H082	229 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	WWP1	Q9H0M0	922 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	ACTL8	Q9H568	366 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	HACD3	Q9P035	362 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	SEMA5B	Q9P283	1151 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	RSPH14	Q9UHP6	348 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	RARRES3	Q9UL19	164 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	PADI1	Q9ULC6	663 aa		10.3	□□□□□ -0.76

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