RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 AXIN1O15169 862 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 IFNA16P05015 189 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 ATP1B2P14415 290 aaPredicted RBP9.72□□□□□ -0.85
LIG3-216ENST00000593099 SERPINB5P36952 375 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 SOX9P48436 509 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 COPAP53621 1224 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TUBA1BP68363 451 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 GPRC6AQ5T6X5 926 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 EMC10Q5UCC4 262 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TUBA1AQ71U36 451 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TMPRSS11BQ86T26 416 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 SLC39A13Q96H72 371 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 HIC2Q96JB3 615 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 PPP3R2Q96LZ3 170 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 SIKE1Q9BRV8 207 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 SIRPGQ9P1W8 387 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TNFRSF10BO14763 440 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 GRID2O43424 1007 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 PI15O43692 258 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 PAPSS2O95340 614 aaPredicted RBP9.72□□□□□ -0.85
LIG3-216ENST00000593099 PRAMEF12O95522 483 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 HMGA1P17096 107 aaKnown RBP9.72□□□□□ -0.85
LIG3-216ENST00000593099 LBPP18428 481 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 NTSP30990 170 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 HNF1BP35680 557 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 HSD17B2P37059 387 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 CLCNKAP51800 687 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 NFYCQ13952 458 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TRMT10BQ6PF06 316 aaKnown RBP9.72□□□□□ -0.85
LIG3-216ENST00000593099 ARHGAP22Q7Z5H3 698 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TRABD2AQ86V40 505 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 NRSN1Q8IZ57 195 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 NPWQ8N729 165 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 SRFBP1Q8NEF9 429 aaKnown RBP9.72□□□□□ -0.85
LIG3-216ENST00000593099 NXNL1Q96CM4 212 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 WDR92Q96MX6 357 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 SLC22A12Q96S37 553 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 SYT11Q9BT88 431 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 YBX2Q9Y2T7 364 aaKnown RBP9.72□□□□□ -0.85
LIG3-216ENST00000593099 HOXC13P31276 330 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 AMZ1Q400G9 498 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 FSTL4Q6MZW2 842 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 KIAA1161Q6NSJ0 714 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TRIM74Q86UV6 250 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TRIM73Q86UV7 250 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 C11orf74Q86VG3 221 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 SIDT2Q8NBJ9 832 aaKnown RBP9.72□□□□□ -0.85
LIG3-216ENST00000593099 FAM162AQ96A26 154 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 SLC22A18Q96BI1 424 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 NSL1Q96IY1 281 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TMEM120AQ9BXJ8 343 aa9.72□□□□□ -0.85
LIG3-216ENST00000593099 TDRD1Q9BXT4 1180 aaKnown RBP9.72□□□□□ -0.85
LIG3-216ENST00000593099 WASH4PA8MWX3 477 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 SLC28A1O00337 649 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 KRT8P05787 483 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 PSMA4P25789 261 aaKnown RBP9.71□□□□□ -0.85
LIG3-216ENST00000593099 SLC10A2Q12908 348 aaPredicted RBP9.71□□□□□ -0.85
LIG3-216ENST00000593099 MLF2Q15773 248 aaPredicted RBP9.71□□□□□ -0.85
LIG3-216ENST00000593099 CYP51A1Q16850 503 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 GRAMD1BQ3KR37 738 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 ATAD3BQ5T9A4 648 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 NCEH1Q6PIU2 408 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 TRPM8Q7Z2W7 1104 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 MAGED4Q96JG8 741 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 AGAP2Q99490 1192 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 COQ6Q9Y2Z9 468 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 TCRBV7S3A2A0A539 114 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 FAM47E-STBD1D6RA91 191 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 BIRC5O15392 142 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 FAM155BO75949 473 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 ALDH4A1P30038 563 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 PPP2R1BP30154 601 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 S100A3P33764 101 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 SLC6A11P48066 632 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 CDH13P55290 713 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 CYLC2Q14093 348 aaPredicted RBP9.71□□□□□ -0.85
LIG3-216ENST00000593099 ANGPT1Q15389 498 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 CYP2U1Q7Z449 544 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 CHST14Q8NCH0 376 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 ATAD3AQ9NVI7 634 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 OSER1Q9NX31 292 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 KCTD3Q9Y597 815 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 SNX8Q9Y5X2 465 aa9.71□□□□□ -0.85
LIG3-216ENST00000593099 AZIN1O14977 448 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 TSPAN8P19075 237 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 RPL3P39023 403 aaKnown RBP9.71□□□□□ -0.86
LIG3-216ENST00000593099 TRAF2Q12933 501 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 KLF1Q13351 362 aaPredicted RBP9.71□□□□□ -0.86
LIG3-216ENST00000593099 ACAP2Q15057 778 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 SULT1C3Q6IMI6 304 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 SCAMP4Q969E2 229 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 ZNF689Q96CS4 500 aaPredicted RBP9.71□□□□□ -0.86
LIG3-216ENST00000593099 ASB16Q96NS5 453 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 TMEM98Q9Y2Y6 226 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 MCM3APO60318 1980 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 RNF103-CHMP3A0A140T963 221 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 NIPSNAP2O75323 286 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 HGFP14210 728 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 ETV3P41162 512 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 NUDT2P50583 147 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms