RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	THTPA	Q9BU02	230 aa		15.23	■□□□□ 0.03
DDX39A-209	ENST00000589318	GATA5	Q9BWX5	397 aa	Predicted RBP	15.23	■□□□□ 0.03
DDX39A-209	ENST00000589318	TMEM245	Q9H330	911 aa		15.23	■□□□□ 0.03
DDX39A-209	ENST00000589318	CLDND1	Q9NY35	253 aa		15.23	■□□□□ 0.03
DDX39A-209	ENST00000589318	APPL1	Q9UKG1	709 aa		15.23	■□□□□ 0.03
DDX39A-209	ENST00000589318	FAM50B	Q9Y247	325 aa		15.23	■□□□□ 0.03
DDX39A-209	ENST00000589318	OAS3	Q9Y6K5	1087 aa	Known RBP	15.23	■□□□□ 0.03
DDX39A-209	ENST00000589318	PIKFYVE	Q9Y2I7	2098 aa		15.23	■□□□□ 0.03
DDX39A-209	ENST00000589318	GLYATL1P3	A0A0U1RQE8	302 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	RHOBTB1	O94844	696 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	HLA-E	P13747	358 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	UGT1A6	P19224	532 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	CD9	P21926	228 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	UGT1A1	P22309	533 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	UGT1A4	P22310	534 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	UGT1A3	P35503	534 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	UGT1A5	P35504	534 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	KCNC1	P48547	511 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	KPNA2	P52292	529 aa	Known RBP	15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	ST8SIA6	P61647	398 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	PFKP	Q01813	784 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	COL19A1	Q14993	1142 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	ACAP2	Q15057	778 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	CHRNA6	Q15825	494 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	ZNF805	Q5CZA5	627 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	C9orf64	Q5T6V5	341 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	LIPM	Q5VYY2	423 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	ISCA2	Q86U28	154 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	SERPINA9	Q86WD7	417 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	TXNDC5	Q8NBS9	432 aa	Known RBP	15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	C17orf50	Q8WW18	174 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	PTER	Q96BW5	349 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	ITPKC	Q96DU7	683 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	MOCOS	Q96EN8	888 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	LRIG1	Q96JA1	1093 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	NMUR2	Q9GZQ4	415 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	ASB8	Q9H765	288 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	RMI1	Q9H9A7	625 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	TAS2R13	Q9NYV9	303 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	DKK3	Q9UBP4	350 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	SARDH	Q9UL12	918 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318	MTCH2	Q9Y6C9	303 aa		15.22	■□□□□ 0.03
DDX39A-209	ENST00000589318		H3BMM5	538 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	ZBTB14	O43829	449 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	NIPSNAP2	O75323	286 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	TFAP2A	P05549	437 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	CD1D	P15813	335 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	KCNA5	P22460	613 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	HSPA13	P48723	471 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	PTPN5	P54829	565 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	NR1H2	P55055	460 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	ABCE1	P61221	599 aa	Known RBP	15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	ZNF234	Q14588	700 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	HNRNPA1L2	Q32P51	320 aa	Known RBP	15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	SFT2D3	Q587I9	215 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	DHRS4L2	Q6PKH6	230 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	PAQR3	Q6TCH7	311 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	CRLF3	Q8IUI8	442 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	ERI1	Q8IV48	349 aa	Known RBP	15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	STK40	Q8N2I9	435 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	RIPOR3	Q96MK2	946 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	GPR21	Q99679	349 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	BOC	Q9BWV1	1114 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	CCDC68	Q9H2F9	335 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	PCDH12	Q9NPG4	1184 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	TICRR	Q7Z2Z1	1910 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	LRRK1	Q38SD2	2015 aa		15.21	■□□□□ 0.03
DDX39A-209	ENST00000589318	SH3PXD2B	A1X283	911 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	NEMP2	A6NFY4	417 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	UPK3BL1	B0FP48	263 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	UPK3BL2	E5RIL1	263 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	PFDN6	O15212	129 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	ECI2	O75521	394 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	TRMU	O75648	421 aa	Known RBP	15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	ESR1	P03372	595 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	SERPINA6	P08185	405 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	TFEB	P19484	476 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	ITGAL	P20701	1170 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	ACRV1	P26436	265 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	GDI1	P31150	447 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	SPINT3	P49223	89 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	METAP1	P53582	386 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	FOLH1	Q04609	750 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	PDAP1	Q13442	181 aa	Known RBP	15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	FNDC3B	Q53EP0	1204 aa	Known RBP	15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	DUS1L	Q6P1R4	473 aa	Known RBP	15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	CHRDL2	Q6WN34	429 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318		Q6ZNX1	250 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	YAF2	Q8IY57	180 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	HCAR2	Q8TDS4	363 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	KCNJ9	Q92806	393 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	PBXIP1	Q96AQ6	731 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	SGF29	Q96ES7	293 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	TTYH1	Q9H313	450 aa	Predicted RBP	15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	STN1	Q9H668	368 aa	Known RBP	15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	PLGRKT	Q9HBL7	147 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	ACSS2	Q9NR19	701 aa		15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	C6orf203	Q9P0P8	240 aa	Predicted RBP	15.21	■□□□□ 0.02
DDX39A-209	ENST00000589318	MARCO	Q9UEW3	520 aa	Predicted RBP	15.21	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms