RNA–Protein interactions for RNA: ENST00000584796.5

VAPA-208, Transcript of VAMP associated protein A, human

TSL 3

Gene VAPA, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAPA-208	ENST00000584796	ANKRD9	Q96BM1	317 aa	Predicted RBP	2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	ZNF524	Q96C55	264 aa		2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	ZC3HAV1L	Q96H79	300 aa	Known RBP	2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	PRMT6	Q96LA8	375 aa	Predicted RBP	2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	DEFB118	Q96PH6	123 aa		2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	MXRA8	Q9BRK3	442 aa		2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	MOV10L1	Q9BXT6	1211 aa	Known RBP	2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	DEFB129	Q9H1M3	183 aa		2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	STN1	Q9H668	368 aa	Known RBP	2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	EPHX3	Q9H6B9	360 aa		2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	DDX4	Q9NQI0	724 aa	Known RBP	2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	RASSF1	Q9NS23	344 aa		2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	FBXO9	Q9UK97	447 aa	Predicted RBP	2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	USP24	Q9UPU5	2620 aa		2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	NCOR2	Q9Y618	2525 aa		2.73	□□□□□ -1.97
VAPA-208	ENST00000584796	COL11A1	P12107	1806 aa	Predicted RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	CHD8	Q9HCK8	2581 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	ZNF292	O60281	2723 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	COL1A1	P02452	1464 aa	Predicted RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	SPTBN2	O15020	2390 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	GOLGA6L9	A6NEM1	432 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	TCEA3	O75764	348 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	HSPA5	P11021	654 aa	Known RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	SLC2A4	P14672	509 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	EIF2S2	P20042	333 aa	Known RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	BDNF	P23560	247 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	MAN1A1	P33908	653 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	PSMC4	P43686	418 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	LMOD3	Q0VAK6	560 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	SHH	Q15465	462 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	MAPRE1	Q15691	268 aa	Known RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	CTF1	Q16619	201 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	ZC2HC1B	Q5TFG8	222 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	LCTL	Q6UWM7	567 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	ZNF852	Q6ZMS4	543 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	COPS6	Q7L5N1	327 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	SMAP1	Q8IYB5	467 aa	Predicted RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	TMTC2	Q8N394	836 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	ADAD2	Q8NCV1	583 aa	Known RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	MYRIP	Q8NFW9	859 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	DUSP19	Q8WTR2	217 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	RUBCN	Q92622	972 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	ZKSCAN4	Q969J2	545 aa	Predicted RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	ZNF583	Q96ND8	569 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	ISCA1	Q9BUE6	129 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	TMEM39B	Q9GZU3	492 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	SLC32A1	Q9H598	525 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	FKRP	Q9H9S5	495 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	PPCS	Q9HAB8	311 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	MKKS	Q9NPJ1	570 aa	Predicted RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	TMEM160	Q9NX00	188 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	ZNF69	Q9UC07	566 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	TRMT112	Q9UI30	125 aa	Known RBP	2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	PADI1	Q9ULC6	663 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	SUFU	Q9UMX1	484 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	CARD8	Q9Y2G2	431 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	AMDHD2	Q9Y303	409 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	DAAM1	Q9Y4D1	1078 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	SMAD5-AS1	Q9Y6J3	95 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	STON1	Q9Y6Q2	735 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	FRYL	O94915	3013 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	CACNA1F	O60840	1977 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	ZNF236	Q9UL36	1845 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	CACNA1H	O95180	2353 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	MYO7A	Q13402	2215 aa		2.72	□□□□□ -1.97
VAPA-208	ENST00000584796	RIF1	Q5UIP0	2472 aa	Known RBP	2.71	□□□□□ -1.97
VAPA-208	ENST00000584796	TECTA	O75443	2155 aa		2.71	□□□□□ -1.97
VAPA-208	ENST00000584796	SH3TC1	Q8TE82	1336 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	GVINP1	Q7Z2Y8	2422 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	TET1	Q8NFU7	2136 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	TPR	P12270	2363 aa	Known RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	FOCAD	Q5VW36	1801 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	SH2D7	A6NKC9	451 aa	Predicted RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	WEE2	P0C1S8	567 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	PATE4	P0C8F1	98 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	AGA	P20933	346 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	EIF2S3	P41091	472 aa	Known RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	TRAPPC10	P48553	1259 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	HOXA1	P49639	335 aa	Predicted RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	RAD23B	P54727	409 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	HNRNPH2	P55795	449 aa	Known RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	RPS8	P62241	208 aa	Known RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	CHRND	Q07001	517 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	ITGAD	Q13349	1161 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	PARP10	Q53GL7	1025 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	STXBP5	Q5T5C0	1151 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	SLC35E4	Q6ICL7	350 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	CEACAM20	Q6UY09	585 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	TAOK1	Q7L7X3	1001 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	PPP1R42	Q7Z4L9	355 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	NOXA1	Q86UR1	476 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	FAM160B2	Q86V87	743 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	MYLK4	Q86YV6	388 aa	Predicted RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	APOBEC3F	Q8IUX4	373 aa	Known RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	KIAA2013	Q8IYS2	634 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	RNF113B	Q8IZP6	322 aa	Known RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	DSEL	Q8IZU8	1212 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	CPXCR1	Q8N123	301 aa		2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	2.71	□□□□□ -1.98
VAPA-208	ENST00000584796	OR10V1	Q8NGI7	309 aa		2.71	□□□□□ -1.98

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