RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 NPEPPSL1A6NEC2 478 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 TARM1B6A8C7 271 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 UBXN8O00124 270 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 SYNCRIPO60506 623 aaKnown RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 LMNAP02545 664 aaKnown RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 ENO1P06733 434 aaKnown RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 EPHX1P07099 455 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 CBSLP0DN79 551 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 CHRNB1P11230 501 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 HNRNPLP14866 589 aaKnown RBP eCLIP9.17□□□□□ -0.94
SS18-220ENST00000582092 NQO1P15559 274 aaKnown RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 PTPN4P29074 926 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 CBSP35520 551 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 EIF2DP41214 584 aaKnown RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 GRIA2P42262 883 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 SOX9P48436 509 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 NCALDP61601 193 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 MTAPQ13126 283 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 RBBP7Q16576 425 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 HNRNPA1L2Q32P51 320 aaKnown RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 SETMARQ53H47 684 aaPredicted RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 LRRC73Q5JTD7 316 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 CTSL3PQ5NE16 218 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 LDLRAP1Q5SW96 308 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 C6orf163Q5TEZ5 329 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 EPGNQ6UW88 154 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 TMEM207Q6UWW9 146 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 DPPA4Q7L190 304 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 EFL1Q7Z2Z2 1120 aaKnown RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 C12orf40Q86WS4 652 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 HOMEZQ8IX15 550 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 CPNE9Q8IYJ1 553 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 NRSN1Q8IZ57 195 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 ZNF366Q8N895 744 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 TERB1Q8NA31 727 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 PIP4K2CQ8TBX8 421 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 FRS2Q8WU20 508 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 EEF1AKMT1Q8WVE0 214 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 SKA1Q96BD8 255 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 CMTM5Q96DZ9 223 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 L3HYPDHQ96EM0 354 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 BIRC8Q96P09 236 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 EGFL8Q99944 293 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 P2RY13Q9BPV8 354 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 ZSCAN5AQ9BUG6 496 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 CCDC28BQ9BUN5 200 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 P2RY12Q9H244 342 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 HPS4Q9NQG7 708 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 LATS2Q9NRM7 1088 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 TAGLN3Q9UI15 199 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 CD84Q9UIB8 345 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 TSR3Q9UJK0 312 aaKnown RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 RAB23Q9ULC3 237 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 PCDHGA2Q9Y5H1 932 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 TNPO3Q9Y5L0 923 aaKnown RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 WASF2Q9Y6W5 498 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 PTPRZ1P23471 2315 aaPredicted RBP9.17□□□□□ -0.94
SS18-220ENST00000582092 SPAG17Q6Q759 2223 aa9.17□□□□□ -0.94
SS18-220ENST00000582092 TRBV5-4A0A0C4DH59 114 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 TSPAN11A1L157 253 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 NEMP2A6NFY4 417 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 NCF1BA6NI72 391 aaPredicted RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 NCF1CA8MVU1 366 aaPredicted RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 PRRT4C9JH25 899 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 WNT9AO14904 365 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 NPC1O15118 1278 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 KAT7O95251 611 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 MLYCDO95822 493 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 FTH1P02794 183 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 CHRNGP07510 517 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 C1SP09871 688 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 HIST1H2AGP0C0S8 130 aaPredicted RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 SBK3P0C264 359 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 HLA-EP13747 358 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 ATP1B2P14415 290 aaPredicted RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 NCF1P14598 390 aaPredicted RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 ALOX15P16050 662 aaPredicted RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 HIST1H2ADP20671 130 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 ITGB7P26010 798 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 EEF1DP29692 281 aaKnown RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 GJA4P35212 333 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 NFKB2Q00653 900 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 GALNT1Q10472 559 aaPredicted RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 GTF2H3Q13889 308 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 ELAVL3Q14576 367 aaKnown RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 ZNF234Q14588 700 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 OR4D1Q15615 310 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 TSNQ15631 228 aaKnown RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 PDCD2Q16342 344 aaPredicted RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 CDKN3Q16667 212 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 TMEM196Q5HYL7 178 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 ZNF678Q5SXM1 525 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 CES4AQ5XG92 561 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 MACC1Q6ZN28 852 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 CUZD1Q86UP6 607 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 LONP2Q86WA8 852 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 ZSWIM9Q86XI8 627 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 ETFBKMTQ8IXQ9 262 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 CLYBLQ8N0X4 340 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 TMEM151AQ8N4L1 468 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms