RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 UPK3BL2E5RIL1 263 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SPINT1O43278 529 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TM7SF2O76062 418 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ITGB6P18564 788 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 AOC1P19801 751 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SERPINB5P36952 375 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 KPNA2P52292 529 aaKnown RBP12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 COPAP53621 1224 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 NFATC2Q13469 925 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ATP13A5Q4VNC0 1218 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TMEM198Q66K66 360 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 KLC3Q6P597 504 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 EPGNQ6UW88 154 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 HPS6Q86YV9 775 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PELI3Q8N2H9 469 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 GPR150Q8NGU9 434 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 LPGAT1Q92604 370 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 EXT2Q93063 718 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SLC30A3Q99726 388 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PHF7Q9BWX1 381 aaPredicted RBP12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SERGEFQ9UGK8 458 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ZDHHC2Q9UIJ5 367 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SCOCQ9UIL1 159 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SORCS3Q9UPU3 1222 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MED16Q9Y2X0 877 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RAP2CQ9Y3L5 183 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 GLYATL1P3A0A0U1RQE8 302 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 NIPSNAP2O75323 286 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CIB2O75838 187 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 HNRNPLP14866 589 aaKnown RBP eCLIP12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 EIF2DP41214 584 aaKnown RBP12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 POLD2P49005 469 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CSRP3P50461 194 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CLCN5P51795 746 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RALGDSQ12967 914 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ARHGEF7Q14155 803 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TYSND1Q2T9J0 566 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 DNAL1Q4LDG9 190 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ZNF648Q5T619 568 aaPredicted RBP12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 AGAP9Q5VTM2 703 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 FBXL19Q6PCT2 694 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RNF111Q6ZNA4 994 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SERPINA9Q86WD7 417 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TXNDC5Q8NBS9 432 aaKnown RBP12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 FUBP1Q96AE4 644 aaKnown RBP12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PHF21BQ96EK2 531 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 BIRC8Q96P09 236 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 GPR78Q96P69 363 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MRPL57Q9BQC6 102 aaKnown RBP12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TMEM233B4DJY2 109 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 H7C0S8 307 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 UBTFL6P0CB48 400 aaPredicted RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ALOX15P16050 662 aaPredicted RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TFEBP19484 476 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PSMA3P25788 255 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SPINT3P49223 89 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PRKAA1Q13131 559 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 C6orf163Q5TEZ5 329 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RNF148Q8N7C7 305 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TSPAN17Q96FV3 270 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TRIM4Q9C037 500 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MKRN2Q9H000 416 aaKnown RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SARS2Q9NP81 518 aaKnown RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 STX18Q9P2W9 335 aaKnown RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PRSS21Q9Y6M0 314 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MYO15AQ9UKN7 3530 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TICRRQ7Z2Z1 1910 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SHISA7A6NL88 538 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MID1O15344 667 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 HDAC3O15379 428 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ADAM23O75077 832 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PRNPP04156 253 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 LTA4HP09960 611 aaKnown RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ANPEPP15144 967 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PFKPQ01813 784 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ASPHQ12797 758 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CNTN1Q12860 1018 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CUL3Q13618 768 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SETMARQ53H47 684 aaPredicted RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TMEM196Q5HYL7 178 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SH2D4BQ5SQS7 431 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PTCRAQ6ISU1 281 aaPredicted RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TRIM67Q6ZTA4 783 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 LCA5Q86VQ0 697 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 DEFB107AQ8IZN7 70 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 IL17RCQ8NAC3 791 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CMTM5Q96DZ9 223 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TRAPPC9Q96Q05 1148 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MMADHCQ9H3L0 296 aaPredicted RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 NCKIPSDQ9NZQ3 722 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TMPRSS11EQ9UL52 423 aa12.53□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TARM1B6A8C7 271 aa12.52□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MATN2O00339 956 aa12.52□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MMP20O60882 483 aa12.52□□□□□ -0.4
CDK5RAP3-217ENST00000580287 VIPR1P32241 457 aa12.52□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SPAM1P38567 509 aa12.52□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RAP1GDS1P52306 607 aa12.52□□□□□ -0.4
CDK5RAP3-217ENST00000580287 POLE2P56282 527 aa12.52□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ACTR3P61158 418 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms