RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 SNX19Q92543 992 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 C1QTNF7Q9BXJ2 289 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 POPDC3Q9HBV1 291 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 MRPL40Q9NQ50 206 aaKnown RBP24.72■■□□□ 1.55
SHMT1-207ENST00000580002 INTS9Q9NV88 658 aaKnown RBP24.72■■□□□ 1.55
SHMT1-207ENST00000580002 ZBTB32Q9Y2Y4 487 aaPredicted RBP24.72■■□□□ 1.55
SHMT1-207ENST00000580002 TK2O00142 265 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 LTA4HP09960 611 aaKnown RBP24.71■■□□□ 1.55
SHMT1-207ENST00000580002 CD1DP15813 335 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 MAOBP27338 520 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 CCR5P51681 352 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 XKR5Q6UX68 686 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 PIWIL4Q7Z3Z4 852 aaKnown RBP24.71■■□□□ 1.55
SHMT1-207ENST00000580002 ZBTB2Q8N680 514 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 ARFGAP2Q8N6H7 521 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 INPP5DQ92835 1189 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 LINGO1Q96FE5 620 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 SCYL1Q96KG9 808 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 IQCGQ9H095 443 aaKnown RBP24.71■■□□□ 1.55
SHMT1-207ENST00000580002 SPATS2LQ9NUQ6 558 aaKnown RBP24.71■■□□□ 1.55
SHMT1-207ENST00000580002 ADAM21Q9UKJ8 722 aa24.71■■□□□ 1.55
SHMT1-207ENST00000580002 AP2A2O94973 939 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 ZWINTO95229 277 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 AOAHP28039 575 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 MDH1P40925 334 aaKnown RBP24.7■■□□□ 1.55
SHMT1-207ENST00000580002 PRLHRP49683 370 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 SLC18A1P54219 525 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 INSCQ1MX18 579 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 LRRC8EQ6NSJ5 796 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 MAMSTRQ6ZN01 415 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 TRAPPC5Q8IUR0 188 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 TMEM145Q8NBT3 493 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 CNOT10Q9H9A5 744 aaKnown RBP24.7■■□□□ 1.55
SHMT1-207ENST00000580002 NMRAL1Q9HBL8 299 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 SLC23A2Q9UGH3 650 aa24.7■■□□□ 1.55
SHMT1-207ENST00000580002 PNMA8BQ9ULN7 279 aaPredicted RBP24.7■■□□□ 1.55
SHMT1-207ENST00000580002 CDC7O00311 574 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 TM9SF1O15321 606 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 DHRS4L1P0CG22 281 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 COL6A2P12110 1019 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 TEAD1P28347 426 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 SKIV2L2P42285 1042 aaKnown RBP24.7■■□□□ 1.54
SHMT1-207ENST00000580002 SRSF5Q13243 272 aaKnown RBP24.7■■□□□ 1.54
SHMT1-207ENST00000580002 BOP1Q14137 746 aaKnown RBP24.7■■□□□ 1.54
SHMT1-207ENST00000580002 OTOAQ7RTW8 1153 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 C11orf96Q7Z7L8 435 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 ISCA2Q86U28 154 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 ELMO1Q92556 727 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 ALG9Q9H6U8 611 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 LATS2Q9NRM7 1088 aa24.7■■□□□ 1.54
SHMT1-207ENST00000580002 PHPT1Q9NRX4 125 aaPredicted RBP24.7■■□□□ 1.54
SHMT1-207ENST00000580002 EML5Q05BV3 1969 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 DNAH14Q0VDD8 3507 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 SDK1Q7Z5N4 2213 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 FPGTO14772 594 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 NDUFS2O75306 463 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 CEACAM5P06731 702 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 GSTA1P08263 222 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 MYCLP1P12525 358 aaPredicted RBP24.69■■□□□ 1.54
SHMT1-207ENST00000580002 TDGF1P13385 188 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 TFEBP19484 476 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 HSPA14Q0VDF9 509 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 ILF2Q12905 390 aaKnown RBP24.69■■□□□ 1.54
SHMT1-207ENST00000580002 OR4D1Q15615 310 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 HHATQ5VTY9 493 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 CYHR1Q6ZMK1 362 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 TAX1BP1Q86VP1 789 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 MOCOSQ96EN8 888 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 SYTL2Q9HCH5 934 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 ACSS2Q9NR19 701 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 XPR1Q9UBH6 696 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 CDYLQ9Y232 598 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 PLEKHM1Q9Y4G2 1056 aa24.69■■□□□ 1.54
SHMT1-207ENST00000580002 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 TARM1B6A8C7 271 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 VEGFDO43915 354 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 NUAK1O60285 661 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 PREPP48147 710 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 PFN3P60673 137 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 RPL6Q02878 288 aaKnown RBP24.68■■□□□ 1.54
SHMT1-207ENST00000580002 ZNF658BQ4V348 819 aaPredicted RBP24.68■■□□□ 1.54
SHMT1-207ENST00000580002 UGT3A1Q6NUS8 523 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 TMEFF1Q8IYR6 380 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 CCDC63Q8NA47 563 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 DENND6BQ8NEG7 585 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 PANX3Q96QZ0 392 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 CCM2Q9BSQ5 444 aa24.68■■□□□ 1.54
SHMT1-207ENST00000580002 NPEPPSL1A6NEC2 478 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 METTL12A8MUP2 240 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 CHUKO15111 745 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 POP7O75817 140 aaKnown RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 KCNA4P22459 653 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 AKT2P31751 481 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 IL2P60568 153 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 SEPT7Q16181 437 aaKnown RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 FAM83EQ2M2I3 478 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 BCL7AQ4VC05 210 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 TECRLQ5HYJ1 363 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 CES4AQ5XG92 561 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 LAYNQ6UX15 382 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms