RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 OTOAQ7RTW8 1153 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 TBC1D1Q86TI0 1168 aaPredicted RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 TRAPPC5Q8IUR0 188 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 RGL4Q8IZJ4 473 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 KRT222Q8N1A0 295 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 NKAPQ8N5F7 415 aaKnown RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 DEFB119Q8N690 84 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 OR56A4Q8NGH8 313 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 CD200R1Q8TD46 325 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 SKA1Q96BD8 255 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 KLHDC7BQ96G42 594 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 SCARF2Q96GP6 870 aaPredicted RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 SLC6A18Q96N87 628 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 TSNARE1Q96NA8 513 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 VPS11Q9H270 941 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 PCMTD2Q9NV79 361 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 DCDC2Q9UHG0 476 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 SMG5Q9UPR3 1016 aaKnown RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 PCDHGA2Q9Y5H1 932 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 TMEM202A6NGA9 273 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 IQCF5A8MTL0 148 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 GOLGA8RI6L899 631 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 COPEO14579 308 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 GRID2O43424 1007 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 GALR2O43603 387 aaPredicted RBP10.57□□□□□ -0.72
SS18-213ENST00000579640 DNAJC6O75061 913 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 GLRA3O75311 464 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 APOA4P06727 396 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 CEACAM5P06731 702 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 THEGLP0DJG4 465 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 CBSLP0DN79 551 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 BRAFP15056 766 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 ZNF37AP17032 561 aaPredicted RBP10.57□□□□□ -0.72
SS18-213ENST00000579640 CBSP35520 551 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 DPP6P42658 865 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 RGS4P49798 205 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 KPNA2P52292 529 aaKnown RBP10.57□□□□□ -0.72
SS18-213ENST00000579640 PLOD1Q02809 727 aaPredicted RBP10.57□□□□□ -0.72
SS18-213ENST00000579640 INSCQ1MX18 579 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 TSNAXIP1Q2TAA8 658 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 PLK5Q496M5 336 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 PLEKHS1Q5SXH7 462 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 LYSMD4Q5XG99 296 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 PIM3Q86V86 326 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 GALNT13Q8IUC8 556 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 C4orf33Q8N1A6 199 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 OXR1Q8N573 874 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 ZBTB2Q8N680 514 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 BANPQ8N9N5 519 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 SIDT2Q8NBJ9 832 aaKnown RBP10.57□□□□□ -0.72
SS18-213ENST00000579640 ZBTB44Q8NCP5 570 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 OR13H1Q8NG92 308 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 LKAAEAR1Q8TD35 194 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 ASZ1Q8WWH4 475 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 APOPT1Q96IL0 206 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 ZC3H10Q96K80 434 aaKnown RBP10.57□□□□□ -0.72
SS18-213ENST00000579640 MIR1-1HGQ9H1L0 117 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 SARS2Q9NP81 518 aaKnown RBP10.57□□□□□ -0.72
SS18-213ENST00000579640 C11orf16Q9NQ32 467 aa10.57□□□□□ -0.72
SS18-213ENST00000579640 A0A1W2PR77 199 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 CCDC189A1A4V9 331 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 PRSS38A1L453 326 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 FAM86C2PA6NEL3 165 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 MGAT4DA6NG13 374 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 FOXO6A8MYZ6 492 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 PRR5-ARHGAP8B1AHC4 643 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 LIN7AO14910 233 aaPredicted RBP10.56□□□□□ -0.72
SS18-213ENST00000579640 PRPF4O43172 522 aaKnown RBP eCLIP10.56□□□□□ -0.72
SS18-213ENST00000579640 HRO43593 1189 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 ENO3P13929 434 aaPredicted RBP10.56□□□□□ -0.72
SS18-213ENST00000579640 VCLP18206 1134 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 ITGB6P18564 788 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 DGKAP23743 735 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 AOAHP28039 575 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 CCR7P32248 378 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 CRHR1P34998 444 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 SLC18A1P54219 525 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 IL2P60568 153 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 ZNF460Q14592 562 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 FAM83EQ2M2I3 478 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 PPM1JQ5JR12 505 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 PAQR3Q6TCH7 311 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 ENPP7Q6UWV6 458 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 KDM7AQ6ZMT4 941 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 CEP68Q76N32 757 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 CLEC14AQ86T13 490 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 ZNF547Q8IVP9 402 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 OR2L2Q8NH16 312 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 C1orf216Q8TAB5 229 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 HM13Q8TCT9 377 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 ELMO1Q92556 727 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 PDLIM5Q96HC4 596 aaKnown RBP10.56□□□□□ -0.72
SS18-213ENST00000579640 UBXN10Q96LJ8 280 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 TIMM29Q9BSF4 260 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 C1QTNF1Q9BXJ1 281 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 IQCGQ9H095 443 aaKnown RBP10.56□□□□□ -0.72
SS18-213ENST00000579640 TM9SF3Q9HD45 589 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 KLQ9UEF7 1012 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 SUSD2Q9UGT4 822 aa10.56□□□□□ -0.72
SS18-213ENST00000579640 THADAQ6YHU6 1953 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms