RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GPR33Q49SQ1 333 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 GPRC6AQ5T6X5 926 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 LYPLAL1Q5VWZ2 237 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 MACC1Q6ZN28 852 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 DPY19L3Q6ZPD9 716 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 RFLNAQ6ZTI6 216 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 TPRG1Q6ZUI0 275 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 EFL1Q7Z2Z2 1120 aaKnown RBP19.99■□□□□ 0.79
CLN3-230ENST00000568076 SPATA19Q7Z5L4 167 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 PDPRQ8NCN5 879 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 TUBGCP5Q96RT8 1024 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 PKP2Q99959 881 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 EMILIN2Q9BXX0 1053 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 NSUN3Q9H649 340 aaKnown RBP19.99■□□□□ 0.79
CLN3-230ENST00000568076 ELOVL2Q9NXB9 296 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 NDUFAF1Q9Y375 327 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 IRAK3Q9Y616 596 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 FXYD1O00168 92 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 GIPC1O14908 333 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 GRM6O15303 877 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 DNAJA2O60884 412 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 YBX1P67809 324 aaKnown RBP19.99■□□□□ 0.79
CLN3-230ENST00000568076 SAMD4BQ5PRF9 694 aaKnown RBP19.99■□□□□ 0.79
CLN3-230ENST00000568076 BLOC1S3Q6QNY0 202 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 ADGRG2Q8IZP9 1017 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 MYO1HQ8N1T3 1032 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 PCYOX1LQ8NBM8 494 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 ATP6V1E2Q96A05 226 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 NR1H4Q96RI1 486 aaPredicted RBP19.99■□□□□ 0.79
CLN3-230ENST00000568076 HTATIP2Q9BUP3 242 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 ZDHHC6Q9H6R6 413 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 IL1RL2Q9HB29 575 aa19.99■□□□□ 0.79
CLN3-230ENST00000568076 PTBP2Q9UKA9 531 aaKnown RBP19.99■□□□□ 0.79
CLN3-230ENST00000568076 LAMA3Q16787 3333 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 TAPBPO15533 448 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 GUCA1CO95843 209 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 C8BP07358 591 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 MRPL19P49406 292 aaKnown RBP19.98■□□□□ 0.79
CLN3-230ENST00000568076 RGS4P49798 205 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 HTR6P50406 440 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 EPHA5P54756 1037 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 RPS6KA2Q15349 733 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 PHKG1Q16816 387 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 SLC5A9Q2M3M2 681 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 Q6ZSR9 355 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 ZBTB2Q8N680 514 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 MRPL43Q8N983 215 aaKnown RBP19.98■□□□□ 0.79
CLN3-230ENST00000568076 MYLIPQ8WY64 445 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 MCCC1Q96RQ3 725 aaPredicted RBP19.98■□□□□ 0.79
CLN3-230ENST00000568076 CPEB1Q9BZB8 566 aaKnown RBP19.98■□□□□ 0.79
CLN3-230ENST00000568076 LINC00597Q9H2U6 94 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 DLGAP2Q9P1A6 1054 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 OARD1Q9Y530 152 aa19.98■□□□□ 0.79
CLN3-230ENST00000568076 TNPO3Q9Y5L0 923 aaKnown RBP19.98■□□□□ 0.79
CLN3-230ENST00000568076 MAGEA13PA6NCF6 341 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 RAD51BO15315 384 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 RNASEH2AO75792 299 aaKnown RBP19.97■□□□□ 0.79
CLN3-230ENST00000568076 CAPN1P07384 714 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 UBTFL6P0CB48 400 aaPredicted RBP19.97■□□□□ 0.79
CLN3-230ENST00000568076 UQCRBP14927 111 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 DGKAP23743 735 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 TRAP1Q12931 704 aaKnown RBP19.97■□□□□ 0.79
CLN3-230ENST00000568076 CARD16Q5EG05 197 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 LRRC73Q5JTD7 316 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 IL23RQ5VWK5 629 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 CHST14Q8NCH0 376 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 C1orf50Q9BV19 199 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 BBS2Q9BXC9 721 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 BRINP2Q9C0B6 783 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 ABCG8Q9H221 673 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 EPS15L1Q9UBC2 864 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 ABCD2Q9UBJ2 740 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 DTNAQ9Y4J8 743 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 INSL6Q9Y581 213 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 ASPDHA6ND91 283 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 NME4O00746 187 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 ANGPT2O15123 496 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 RNASEH1O60930 286 aaKnown RBP19.97■□□□□ 0.79
CLN3-230ENST00000568076 UGT2B4P06133 528 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 PABPC1P11940 636 aaKnown RBP19.97■□□□□ 0.79
CLN3-230ENST00000568076 HSPA7P48741 367 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 B4GALNT1Q00973 533 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 GTF2H2Q13888 395 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 ATP13A5Q4VNC0 1218 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 C6orf136Q5SQH8 315 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 GTF2H2CQ6P1K8 395 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 Q6ZVU0 165 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 USP45Q70EL2 814 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 TICAM1Q8IUC6 712 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 OR4F6Q8NGB9 312 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 LRGUKQ96M69 825 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 FAM126AQ9BYI3 521 aaPredicted RBP19.97■□□□□ 0.79
CLN3-230ENST00000568076 SLC25A13Q9UJS0 675 aa19.97■□□□□ 0.79
CLN3-230ENST00000568076 S100BP04271 92 aaPredicted RBP19.96■□□□□ 0.79
CLN3-230ENST00000568076 PTPN5P54829 565 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 UFM1P61960 85 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 ERVK-8P63133 956 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 IRX1P78414 480 aaPredicted RBP19.96■□□□□ 0.79
CLN3-230ENST00000568076 TRAF3Q13114 568 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 CAPRIN1Q14444 709 aaKnown RBP19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms