RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SLC40A1Q9NP59 571 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 POT1Q9NUX5 634 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 SMOXQ9NWM0 555 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 GUCA1BQ9UMX6 200 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 WDR37Q9Y2I8 494 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 SLC30A1Q9Y6M5 507 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.35■□□□□ 0.85
CLN3-219ENST00000565778 METTL18O95568 372 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 PBLDP30039 288 aaPredicted RBP20.35■□□□□ 0.85
CLN3-219ENST00000565778 RAB15P59190 212 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 MC2RQ01718 297 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 KLF1Q13351 362 aaPredicted RBP20.35■□□□□ 0.85
CLN3-219ENST00000565778 DENND5AQ6IQ26 1287 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 PCSK4Q6UW60 755 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 RBM12BQ8IXT5 1001 aaKnown RBP20.35■□□□□ 0.85
CLN3-219ENST00000565778 ZSCAN1Q8NBB4 408 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 OR13C4Q8NGS5 318 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 WBP1Q96G27 269 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 ZNF514Q96K75 400 aaPredicted RBP20.35■□□□□ 0.85
CLN3-219ENST00000565778 CTRCQ99895 268 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 TMEM121Q9BTD3 319 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 ARNT2Q9HBZ2 717 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 OGFRQ9NZT2 677 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 FEZ2Q9UHY8 353 aaPredicted RBP20.35■□□□□ 0.85
CLN3-219ENST00000565778 PSMD13Q9UNM6 376 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 R3HDM2Q9Y2K5 976 aaKnown RBP20.35■□□□□ 0.85
CLN3-219ENST00000565778 CAPN6Q9Y6Q1 641 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 SCN8AQ9UQD0 1980 aa20.35■□□□□ 0.85
CLN3-219ENST00000565778 TCRBV7S2A1N4TA0A589 114 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 KRT86O43790 486 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 HADHAP40939 763 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 ATP1A2P50993 1020 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 ARSDP51689 593 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 DMPKQ09013 629 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 MSLNQ13421 630 aaPredicted RBP20.34■□□□□ 0.85
CLN3-219ENST00000565778 GPR18Q14330 331 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 NFE2L1Q14494 772 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 TAB3Q8N5C8 712 aaPredicted RBP20.34■□□□□ 0.85
CLN3-219ENST00000565778 IL22RA1Q8N6P7 574 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 BEND7Q8N7W2 519 aaPredicted RBP20.34■□□□□ 0.85
CLN3-219ENST00000565778 BMPERQ8N8U9 685 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 TTC9Q92623 222 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 DCUN1D1Q96GG9 259 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 C9orf72Q96LT7 481 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 TGM7Q96PF1 710 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 TSGA10Q9BZW7 698 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 FAM96AQ9H5X1 160 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 FBXO8Q9NRD0 319 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 CRLS1Q9UJA2 301 aa20.34■□□□□ 0.85
CLN3-219ENST00000565778 CAPN5O15484 640 aaPredicted RBP20.33■□□□□ 0.85
CLN3-219ENST00000565778 PSMD3O43242 534 aa20.33■□□□□ 0.85
CLN3-219ENST00000565778 RALBP11234 206 aa20.33■□□□□ 0.85
CLN3-219ENST00000565778 TPH1P17752 444 aa20.33■□□□□ 0.85
CLN3-219ENST00000565778 GFERP55789 205 aa20.33■□□□□ 0.85
CLN3-219ENST00000565778 GSDMDP57764 484 aa20.33■□□□□ 0.85
CLN3-219ENST00000565778 XIAPP98170 497 aa20.33■□□□□ 0.85
CLN3-219ENST00000565778 FAM83HQ6ZRV2 1179 aaPredicted RBP20.33■□□□□ 0.85
CLN3-219ENST00000565778 SLC35B2Q8TB61 432 aa20.33■□□□□ 0.85
CLN3-219ENST00000565778 NAT14Q8WUY8 206 aa20.33■□□□□ 0.85
CLN3-219ENST00000565778 NKD1Q969G9 470 aa20.33■□□□□ 0.85
CLN3-219ENST00000565778 TEFMQ96QE5 360 aaKnown RBP20.33■□□□□ 0.85
CLN3-219ENST00000565778 MGAQ8IWI9 3026 aa20.33■□□□□ 0.84
CLN3-219ENST00000565778 MGAT4DA6NG13 374 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 POLR1CO15160 346 aaPredicted RBP20.32■□□□□ 0.84
CLN3-219ENST00000565778 RASSF9O75901 435 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 C9P02748 559 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 GDF10P55107 478 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 LY6DQ14210 128 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 RPE65Q16518 533 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 P3H1Q32P28 736 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 SEL1L2Q5TEA6 688 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 METRNLQ641Q3 311 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 KCTD11Q693B1 232 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 CEACAM20Q6UY09 585 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 KLHDC8BQ8IXV7 354 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 ULK4Q96C45 1275 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 ZPBPQ9BS86 351 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 LRRC40Q9H9A6 602 aa20.32■□□□□ 0.84
CLN3-219ENST00000565778 MN1Q10571 1320 aaPredicted RBP20.31■□□□□ 0.84
CLN3-219ENST00000565778 CCL22O00626 93 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 LDB2O43679 373 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 ITGALP20701 1170 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 STIP1P31948 543 aaKnown RBP20.31■□□□□ 0.84
CLN3-219ENST00000565778 LEPRP48357 1165 aaKnown RBP20.31■□□□□ 0.84
CLN3-219ENST00000565778 SEPHS1P49903 392 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 ZNF140P52738 457 aaPredicted RBP20.31■□□□□ 0.84
CLN3-219ENST00000565778 SNX20Q7Z614 316 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 CACNA2D3Q8IZS8 1091 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 OR2L2Q8NH16 312 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 UBE2Q2Q8WVN8 375 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 ATG4AQ8WYN0 398 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 RTP4Q96DX8 246 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 ZDHHC12Q96GR4 267 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 ALS2CR12Q96Q35 445 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 COPS8Q99627 209 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 C19orf43Q9BQ61 176 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 APMAPQ9HDC9 416 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 IMP3Q9NV31 184 aaKnown RBP20.31■□□□□ 0.84
CLN3-219ENST00000565778 FAM8A1Q9UBU6 413 aa20.31■□□□□ 0.84
CLN3-219ENST00000565778 ACSL5Q9ULC5 683 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms