RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ERVPABLB-1P60509 514 aa17■□□□□ 0.31
CLN3-217ENST00000565354 ACTR1AP61163 376 aa17■□□□□ 0.31
CLN3-217ENST00000565354 CTBSQ01459 385 aa17■□□□□ 0.31
CLN3-217ENST00000565354 KCNC4Q03721 635 aa17■□□□□ 0.31
CLN3-217ENST00000565354 LRP8Q14114 963 aa17■□□□□ 0.31
CLN3-217ENST00000565354 INSCQ1MX18 579 aa17■□□□□ 0.31
CLN3-217ENST00000565354 PLA2G4EQ3MJ16 856 aa17■□□□□ 0.31
CLN3-217ENST00000565354 FASTKD1Q53R41 847 aaKnown RBP17■□□□□ 0.31
CLN3-217ENST00000565354 DNTTIP2Q5QJE6 756 aaKnown RBP17■□□□□ 0.31
CLN3-217ENST00000565354 C6orf132Q5T0Z8 1188 aa17■□□□□ 0.31
CLN3-217ENST00000565354 SLC30A9Q6PML9 568 aa17■□□□□ 0.31
CLN3-217ENST00000565354 LVRNQ6Q4G3 990 aa17■□□□□ 0.31
CLN3-217ENST00000565354 CTAGE6Q86UF2 777 aa17■□□□□ 0.31
CLN3-217ENST00000565354 CTAGE4Q8IX94 777 aa17■□□□□ 0.31
CLN3-217ENST00000565354 NXPE1Q8N323 547 aa17■□□□□ 0.31
CLN3-217ENST00000565354 FAM46DQ8NEK8 389 aa17■□□□□ 0.31
CLN3-217ENST00000565354 OR13J1Q8NGT2 312 aa17■□□□□ 0.31
CLN3-217ENST00000565354 CCL4L1Q8NHW4 92 aa17■□□□□ 0.31
CLN3-217ENST00000565354 HEXDCQ8WVB3 486 aa17■□□□□ 0.31
CLN3-217ENST00000565354 SNRNP27Q8WVK2 155 aaKnown RBP17■□□□□ 0.31
CLN3-217ENST00000565354 KCNE4Q8WWG9 221 aa17■□□□□ 0.31
CLN3-217ENST00000565354 TTC9Q92623 222 aa17■□□□□ 0.31
CLN3-217ENST00000565354 ZNF778Q96MU6 729 aa17■□□□□ 0.31
CLN3-217ENST00000565354 DEPDC7Q96QD5 511 aa17■□□□□ 0.31
CLN3-217ENST00000565354 COPS8Q99627 209 aa17■□□□□ 0.31
CLN3-217ENST00000565354 DPH1Q9BZG8 443 aa17■□□□□ 0.31
CLN3-217ENST00000565354 DPH5Q9H2P9 285 aa17■□□□□ 0.31
CLN3-217ENST00000565354 DPEP2Q9H4A9 486 aa17■□□□□ 0.31
CLN3-217ENST00000565354 SIRPGQ9P1W8 387 aa17■□□□□ 0.31
CLN3-217ENST00000565354 GULP1Q9UBP9 304 aa17■□□□□ 0.31
CLN3-217ENST00000565354 TMPRSS11EQ9UL52 423 aa17■□□□□ 0.31
CLN3-217ENST00000565354 GPR34Q9UPC5 381 aa17■□□□□ 0.31
CLN3-217ENST00000565354 MAGEB16A2A368 324 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 B4DGG1 531 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 OPA1O60313 960 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 GOT2P00505 430 aaKnown RBP16.99■□□□□ 0.31
CLN3-217ENST00000565354 ACRV1P26436 265 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 AK4P27144 223 aaPredicted RBP16.99■□□□□ 0.31
CLN3-217ENST00000565354 NMBRP28336 390 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 PPARGP37231 505 aaPredicted RBP16.99■□□□□ 0.31
CLN3-217ENST00000565354 RPIAP49247 311 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 DUSP3P51452 185 aaPredicted RBP16.99■□□□□ 0.31
CLN3-217ENST00000565354 VAC14Q08AM6 782 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 KHDC1Q4VXA5 237 aaKnown RBP16.99■□□□□ 0.31
CLN3-217ENST00000565354 ARMC3Q5W041 872 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 DET1Q7L5Y6 550 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 SERPINA9Q86WD7 417 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 PDIK1LQ8N165 341 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 MPP5Q8N3R9 675 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 OR4L1Q8NH43 312 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 GPBAR1Q8TDU6 330 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 ZNF669Q96BR6 464 aaPredicted RBP16.99■□□□□ 0.31
CLN3-217ENST00000565354 ERP44Q9BS26 406 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 KIFC1Q9BW19 673 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 OSGEPL1Q9H4B0 414 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 POLR1BQ9H9Y6 1135 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 ZDHHC3Q9NYG2 299 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 NCKIPSDQ9NZQ3 722 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 PLEKHM1Q9Y4G2 1056 aa16.99■□□□□ 0.31
CLN3-217ENST00000565354 OR2AG2A6NM03 316 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 PYCARD-AS1I3L0S3 204 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 KLK10O43240 276 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 SEC31AO94979 1220 aaKnown RBP16.98■□□□□ 0.31
CLN3-217ENST00000565354 CKMT1AP12532 417 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 VCLP18206 1134 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 PSMA3P25788 255 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 IVDP26440 423 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 CA5AP35218 305 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 CDKN1CP49918 316 aaPredicted RBP16.98■□□□□ 0.31
CLN3-217ENST00000565354 ARL4CP56559 192 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 ACVR1Q04771 509 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 BIRC2Q13490 618 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 NR0B2Q15466 257 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 BBS9Q3SYG4 887 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 AARS2Q5JTZ9 985 aaKnown RBP16.98■□□□□ 0.31
CLN3-217ENST00000565354 LYPLAL1Q5VWZ2 237 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 HIBCHQ6NVY1 386 aaPredicted RBP16.98■□□□□ 0.31
CLN3-217ENST00000565354 TMEM220Q6QAJ8 160 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 CES3Q6UWW8 571 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 CEP112Q8N8E3 955 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 MFSD3Q96ES6 412 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 STAMBPL1Q96FJ0 436 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 MED8Q96G25 268 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 ZNF514Q96K75 400 aaPredicted RBP16.98■□□□□ 0.31
CLN3-217ENST00000565354 APOLD1Q96LR9 279 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 ASCL3Q9NQ33 180 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 CATSPERZQ9NTU4 200 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 TAAR2Q9P1P5 351 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 KCNK6Q9Y257 313 aa16.98■□□□□ 0.31
CLN3-217ENST00000565354 KIF26BQ2KJY2 2108 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 AGAP14A8MT82 685 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 CHUKO15111 745 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 SNX2O60749 519 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 CSO75390 466 aaKnown RBP16.97■□□□□ 0.31
CLN3-217ENST00000565354 PRSS56P0CW18 603 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 GIMD1P0DJR0 217 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 ZNF7P17097 686 aaPredicted RBP16.97■□□□□ 0.31
CLN3-217ENST00000565354 PBLDP30039 288 aaPredicted RBP16.97■□□□□ 0.31
CLN3-217ENST00000565354 FOXN2P32314 431 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 RPL21P46778 160 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms