RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SEMA6AQ9H2E6 1030 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 LRMDAQ9H2I8 198 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 ZCCHC17Q9NP64 241 aaKnown RBP4.56□□□□□ -1.68
LINC00560-201ENST00000564593 TMEM30AQ9NV96 361 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 C5AR2Q9P296 337 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 MALT1Q9UDY8 824 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 VDAC3Q9Y277 283 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 URADA6NGE7 173 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 SRRM3A6NNA2 597 aaPredicted RBP4.55□□□□□ -1.68
LINC00560-201ENST00000564593 A8MXE2 369 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 PROB1E7EW31 1015 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 CAMTA2O94983 1202 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 NGFRP08138 427 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 POLR2CP19387 275 aaPredicted RBP4.55□□□□□ -1.68
LINC00560-201ENST00000564593 PDLIM4P50479 330 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 GAGE2BQ13066 116 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 MELKQ14680 651 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 GAGE2EQ4V326 116 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 C6orf163Q5TEZ5 329 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 ARMC3Q5W041 872 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 GAGE2AQ6NT46 116 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 TMPRSS12Q86WS5 348 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 TC2NQ8N9U0 490 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 OR10S1Q8NGN2 331 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 VPS33AQ96AX1 596 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 CDCA5Q96FF9 252 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 ZNF479Q96JC4 524 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 ZNF830Q96NB3 372 aaPredicted RBP4.55□□□□□ -1.68
LINC00560-201ENST00000564593 TCP11L1Q9NUJ3 509 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 GAGE2DQ9UEU5 116 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 DDX25Q9UHL0 483 aaKnown RBP4.55□□□□□ -1.68
LINC00560-201ENST00000564593 ZNF541Q9H0D2 1346 aa4.55□□□□□ -1.68
LINC00560-201ENST00000564593 OR2M5A3KFT3 312 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 SSX4O60224 188 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 TADA2AO75478 443 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 PFKFB1P16118 471 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 GABRA5P31644 462 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 RAD23AP54725 363 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 CSE1LP55060 971 aaKnown RBP4.54□□□□□ -1.68
LINC00560-201ENST00000564593 ZNF234Q14588 700 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 SLC39A14Q15043 492 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 SPECC1Q5M775 1068 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 ZNF704Q6ZNC4 412 aaPredicted RBP4.54□□□□□ -1.68
LINC00560-201ENST00000564593 Q75L30 129 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 SATL1Q86VE3 508 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 TMEM219Q86XT9 240 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 RBMXL3Q8N7X1 1067 aaKnown RBP4.54□□□□□ -1.68
LINC00560-201ENST00000564593 RTP4Q96DX8 246 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 ERLEC1Q96DZ1 483 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 SPACA9Q96E40 222 aaPredicted RBP4.54□□□□□ -1.68
LINC00560-201ENST00000564593 ADGRG7Q96K78 797 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 PRMT6Q96LA8 375 aaPredicted RBP4.54□□□□□ -1.68
LINC00560-201ENST00000564593 SLC22A12Q96S37 553 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 ZPBPQ9BS86 351 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 TM6SF1Q9BZW5 370 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 GAREM1Q9H706 876 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 UBTD1Q9HAC8 227 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 OLAHQ9NV23 265 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 KLHL9Q9P2J3 617 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 OSGIN1Q9UJX0 560 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 OR2W1Q9Y3N9 320 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 CCL27Q9Y4X3 112 aa4.54□□□□□ -1.68
LINC00560-201ENST00000564593 ABCC9O60706 1549 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 ASTN2O75129 1339 aaPredicted RBP4.53□□□□□ -1.68
LINC00560-201ENST00000564593 OR5K3A6NET4 321 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 HNRNPCL2B2RXH8 293 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 ZNF587BE7ETH6 402 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 TMEM178BH3BS89 294 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 DIAPH2O60879 1101 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 TRUB2O95900 331 aaKnown RBP4.53□□□□□ -1.68
LINC00560-201ENST00000564593 DAOP14920 347 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 MC5RP33032 325 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 USP8P40818 1118 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 DSCR9P59020 149 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 PLIN5Q00G26 463 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 RAB6CQ53S08 254 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 FIGLAQ6QHK4 219 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 GFRALQ6UXV0 394 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 RAD9BQ6WBX8 426 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 IQCHQ86VS3 1027 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 TMEM173Q86WV6 379 aaPredicted RBP4.53□□□□□ -1.68
LINC00560-201ENST00000564593 SFR1Q86XK3 245 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 SPATA2LQ8IUW3 424 aaPredicted RBP4.53□□□□□ -1.68
LINC00560-201ENST00000564593 OR52I2Q8NH67 350 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 LILRB1Q8NHL6 650 aaPredicted RBP4.53□□□□□ -1.68
LINC00560-201ENST00000564593 FIG4Q92562 907 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 PHF21AQ96BD5 680 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 FAM81BQ96LP2 452 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 OR6C1Q96RD1 312 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 SYT17Q9BSW7 474 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 GPR88Q9GZN0 384 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 ANKRD2Q9GZV1 360 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 RAB6CQ9H0N0 254 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 ERVMER34-1Q9H9K5 563 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 YIPF1Q9Y548 306 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 PCDHAC2Q9Y5I4 1007 aa4.53□□□□□ -1.68
LINC00560-201ENST00000564593 A0A0B4J293 547 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 EDDM13A0A1B0GTR0 161 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 LACTBL1A8MY62 500 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 ANKRD66B4E2M5 251 aa4.53□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms