RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CREG1O75629 220 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 NTRK1P04629 796 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 WASHC5Q12768 1159 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 PRKD1Q15139 912 aaPredicted RBP16.52■□□□□ 0.24
CLN3-211ENST00000564091 RPE65Q16518 533 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 ODF2Q5BJF6 829 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 PWWP2BQ6NUJ5 590 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 TCTN3Q6NUS6 607 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 KDELC1Q6UW63 502 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 FAM151BQ6UXP7 276 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 ASB18Q6ZVZ8 466 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 RASGEF1AQ8N9B8 481 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 SIDT2Q8NBJ9 832 aaKnown RBP16.52■□□□□ 0.24
CLN3-211ENST00000564091 OR8K1Q8NGG5 319 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 BRSK1Q8TDC3 778 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 MIB2Q96AX9 1013 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 SLC41A2Q96JW4 573 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 CHP1Q99653 195 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 PDE7BQ9NP56 450 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 SPTLC3Q9NUV7 552 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 FAM153AQ9UHL3 310 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 PCDHGA6Q9Y5G7 932 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 LOC285095A0A1B0GVY8 99 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 SSU72P8A0A1W2PR75 194 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 CLEC18AA5D8T8 446 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 RFPL1O75677 317 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 DNAJB5O75953 348 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 PDGFAP04085 211 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 EBLN1P0CF75 366 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 PECAM1P16284 738 aaPredicted RBP16.51■□□□□ 0.23
CLN3-211ENST00000564091 NFKB1P19838 968 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 FECHP22830 423 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 ARHGAP25P42331 645 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 TUBB3Q13509 450 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 NFE2L1Q14494 772 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 PPP2R5EQ16537 467 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 SIRPB2Q5JXA9 342 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 LRRC38Q5VT99 294 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 FAM199XQ6PEV8 388 aaPredicted RBP16.51■□□□□ 0.23
CLN3-211ENST00000564091 TMEM220Q6QAJ8 160 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 CLEC18BQ6UXF7 455 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 CLEC18CQ8NCF0 446 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 TFB1MQ8WVM0 346 aaKnown RBP16.51■□□□□ 0.23
CLN3-211ENST00000564091 DNAJC7Q99615 494 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 MAP3K3Q99759 626 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 RAB33BQ9H082 229 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 TRABDQ9H4I3 376 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 IL17CQ9P0M4 197 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 SEMA5BQ9P283 1151 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 RARRES3Q9UL19 164 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 MAN2B2Q9Y2E5 1009 aa16.51■□□□□ 0.23
CLN3-211ENST00000564091 CFAP20Q9Y6A4 193 aaKnown RBP16.51■□□□□ 0.23
CLN3-211ENST00000564091 USP9YO00507 2555 aaPredicted RBP16.51■□□□□ 0.23
CLN3-211ENST00000564091 OR2AG2A6NM03 316 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 KCNJ13O60928 360 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 MT-ND3P03897 115 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 SPAM1P38567 509 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 PMS2P54278 862 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 RPS18P62269 152 aaKnown RBP16.5■□□□□ 0.23
CLN3-211ENST00000564091 DMPKQ09013 629 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 PLCL1Q15111 1095 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 GPRC6AQ5T6X5 926 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 KAZNQ674X7 775 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 RHOT1Q8IXI2 618 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 FAM26EQ8N5C1 309 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 BLOC1S5Q8TDH9 187 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 NAT14Q8WUY8 206 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 UBXN4Q92575 508 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 OXNAD1Q96HP4 312 aaPredicted RBP16.5■□□□□ 0.23
CLN3-211ENST00000564091 MRGPRX2Q96LB1 330 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 TRIM55Q9BYV6 548 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 ACTL8Q9H568 366 aa16.5■□□□□ 0.23
CLN3-211ENST00000564091 IMP3Q9NV31 184 aaKnown RBP16.5■□□□□ 0.23
CLN3-211ENST00000564091 ZNHIT6Q9NWK9 470 aaKnown RBP16.5■□□□□ 0.23
CLN3-211ENST00000564091 USP9XQ93008 2570 aaPredicted RBP16.5■□□□□ 0.23
CLN3-211ENST00000564091 GLYATL1P3A0A0U1RQE8 302 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 C21orf140B9A014 251 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 CST8O60676 142 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 COMTP21964 271 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 PBLDP30039 288 aaPredicted RBP16.49■□□□□ 0.23
CLN3-211ENST00000564091 CDKN2BP42772 138 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 NR2C2P49116 596 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 ARL4DP49703 201 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 ADCY2Q08462 1091 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 PTPRCAPQ14761 206 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 DNTTIP2Q5QJE6 756 aaKnown RBP16.49■□□□□ 0.23
CLN3-211ENST00000564091 LDLRAP1Q5SW96 308 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 ZDHHC20Q5W0Z9 365 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 DUS1LQ6P1R4 473 aaKnown RBP16.49■□□□□ 0.23
CLN3-211ENST00000564091 BZW1Q7L1Q6 419 aaKnown RBP16.49■□□□□ 0.23
CLN3-211ENST00000564091 DET1Q7L5Y6 550 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 RHOT2Q8IXI1 618 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 BEND7Q8N7W2 519 aaPredicted RBP16.49■□□□□ 0.23
CLN3-211ENST00000564091 IPMKQ8NFU5 416 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 INSM2Q96T92 566 aaPredicted RBP16.49■□□□□ 0.23
CLN3-211ENST00000564091 ZCCHC2Q9C0B9 1178 aaKnown RBP16.49■□□□□ 0.23
CLN3-211ENST00000564091 NHEJ1Q9H9Q4 299 aaPredicted RBP16.49■□□□□ 0.23
CLN3-211ENST00000564091 FGF21Q9NSA1 209 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 HRASLS2Q9NWW9 162 aa16.49■□□□□ 0.23
CLN3-211ENST00000564091 DDX56Q9NY93 547 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms