RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SORCS3Q9UPU3 1222 aa5.38□□□□□ -1.55
VPS13C-209ENST00000560637 CAPN7Q9Y6W3 813 aa5.38□□□□□ -1.55
VPS13C-209ENST00000560637 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.38□□□□□ -1.55
VPS13C-209ENST00000560637 LRRC14BA6NHZ5 514 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 RHPN2P1A8MT19 583 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CHURC1-FNTBB4DL54 471 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SLC7A4O43246 635 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 GRID2O43424 1007 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SEC22BO75396 215 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 MOSPD3O75425 235 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 MYO1DO94832 1006 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 PDGFBP01127 241 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 LINC00032P0C843 101 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 THEGLP0DJG4 465 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 GNSP15586 552 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CDH3P22223 829 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SLC1A6P48664 564 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 FNTBP49356 437 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 LIMK2P53671 638 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CYP4F3Q08477 520 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CDC16Q13042 620 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SEMA3BQ13214 749 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 HIST2H2ACQ16777 129 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 PGS1Q32NB8 556 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SPDYE7PQ495Y7 208 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 TEDDM1Q5T9Z0 273 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 TMEM215Q68D42 235 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 HIST2H2AA3Q6FI13 130 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 KIAA0930Q6ICG6 404 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 RANBP10Q6VN20 620 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 LIMS2Q7Z4I7 341 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 ADIPOR2Q86V24 386 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 PLD6Q8N2A8 252 aaKnown RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 RIBC1Q8N443 379 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 FNDC5Q8NAU1 212 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 ACVR1CQ8NER5 493 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 STMN2Q93045 179 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 PPWD1Q96BP3 646 aaKnown RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 MTERF1Q99551 399 aaKnown RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 MGME1Q9BQP7 344 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 OSBPL1AQ9BXW6 950 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SLC2A11Q9BYW1 496 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 RDH14Q9HBH5 336 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 EML4Q9HC35 981 aaKnown RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CD93Q9NPY3 652 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 PNPOQ9NVS9 261 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 TMEM51Q9NW97 253 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 NCDNQ9UBB6 729 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 HSFX1Q9UBD0 423 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 HEY2Q9UBP5 337 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 LHX3Q9UBR4 397 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 MAFFQ9ULX9 164 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 NFS1Q9Y697 457 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CIB2O75838 187 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CPSF4O95639 269 aaKnown RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 TIMP2P16035 220 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 JUNDP17535 347 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 P2RY2P41231 377 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 PRKAG1P54619 331 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 TMEM196Q5HYL7 178 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 LRRC8EQ6NSJ5 796 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 RALGPS2Q86X27 583 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 NKAPQ8N5F7 415 aaKnown RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 LILRA3Q8N6C8 439 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 NCSTNQ92542 709 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF75CPQ92670 426 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SCRN2Q96FV2 425 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 ZFRQ96KR1 1074 aaKnown RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CDH19Q9H159 772 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CCDC167Q9P0B6 97 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SERGEFQ9UGK8 458 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 PPM1HQ9ULR3 514 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 C5orf42Q9H799 3197 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 K7ESM1 405 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 ERAL1O75616 437 aaKnown RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 GBAP04062 536 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 NTRK1P04629 796 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 ANXA6P08133 673 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 ATP1B2P14415 290 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 GPC1P35052 558 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SPINT3P49223 89 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CTSCP53634 463 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 PLA2G16P53816 162 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 DEFB133Q30KQ1 61 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 ACSBG2Q5FVE4 666 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 LIPIQ6XZB0 460 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 CILP2Q8IUL8 1156 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 NXPE1Q8N323 547 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 METTL27Q8N6F8 245 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SMRP1Q8NCR6 262 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 RUBCNQ92622 972 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 TFGQ92734 400 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 GLYATL1Q969I3 302 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 TMUB1Q9BVT8 246 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 IL21RQ9HBE5 538 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SPATS2LQ9NUQ6 558 aaKnown RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 PCDHGB4Q9UN71 923 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 MTF2Q9Y483 593 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-209ENST00000560637 SNX8Q9Y5X2 465 aa5.37□□□□□ -1.55
VPS13C-209ENST00000560637 ARID1BQ8NFD5 2236 aaPredicted RBP5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms