RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 LRRC1Q9BTT6 524 aa9.17□□□□□ -0.94
SMAD3-215ENST00000560424 CINPQ9BW66 212 aaPredicted RBP9.17□□□□□ -0.94
SMAD3-215ENST00000560424 FAM129AQ9BZQ8 928 aa9.17□□□□□ -0.94
SMAD3-215ENST00000560424 ILKAPQ9H0C8 392 aaPredicted RBP9.17□□□□□ -0.94
SMAD3-215ENST00000560424 BRD8Q9H0E9 1235 aa9.17□□□□□ -0.94
SMAD3-215ENST00000560424 CATSPERBQ9H7T0 1116 aa9.17□□□□□ -0.94
SMAD3-215ENST00000560424 MLXIPLQ9NP71 852 aa9.17□□□□□ -0.94
SMAD3-215ENST00000560424 ASF1BQ9NVP2 202 aa9.17□□□□□ -0.94
SMAD3-215ENST00000560424 SIDT1Q9NXL6 827 aaKnown RBP9.17□□□□□ -0.94
SMAD3-215ENST00000560424 GPR83Q9NYM4 423 aa9.17□□□□□ -0.94
SMAD3-215ENST00000560424 SLC17A4Q9Y2C5 497 aa9.17□□□□□ -0.94
SMAD3-215ENST00000560424 PLEKHM1Q9Y4G2 1056 aa9.17□□□□□ -0.94
SMAD3-215ENST00000560424 MN1Q10571 1320 aaPredicted RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 A6NL46 340 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 FAM72CH0Y354 149 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 SNX2O60749 519 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 ASMTLO95671 621 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 CYP2A6P11509 494 aaPredicted RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 AMD1P17707 334 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 IL4RP24394 825 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 PTPN4P29074 926 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 HTR7P34969 479 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 COILP38432 576 aaPredicted RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 ETV3P41162 512 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 HCAR3P49019 387 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 NDST2P52849 883 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 ITGA1P56199 1179 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 RPS18P62269 152 aaKnown RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 SH3BP2P78314 561 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 TFDP2Q14188 446 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 DPYSL3Q14195 570 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 ODF2Q5BJF6 829 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 FAM72AQ5TYM5 149 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 LYPLAL1Q5VWZ2 237 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 FAM72DQ6L9T8 149 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 FAM72BQ86X60 149 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 CCDC50Q8IVM0 306 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 KCTD6Q8NC69 237 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 FDCSPQ8NFU4 85 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 PTCD2Q8WV60 388 aaKnown RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 RNF25Q96BH1 459 aaPredicted RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 C9orf72Q96LT7 481 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 COQ10AQ96MF6 247 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 TGM7Q96PF1 710 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 RNF157Q96PX1 679 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 KRT12Q99456 494 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 HERPUD2Q9BSE4 406 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 SNRNP25Q9BV90 132 aaKnown RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 AP1M1Q9BXS5 423 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 PARD6BQ9BYG5 372 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 KLC2Q9H0B6 622 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 DDX47Q9H0S4 455 aaKnown RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 ZWILCHQ9H900 591 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 PCDH18Q9HCL0 1135 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 PDE7BQ9NP56 450 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 AGPAT4Q9NRZ5 378 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 ARGLU1Q9NWB6 273 aaPredicted RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 B4GALT6Q9UBX8 382 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 PCSK1NQ9UHG2 260 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 ZNHIT2Q9UHR6 403 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 FZD10Q9ULW2 581 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 DRG1Q9Y295 367 aaKnown RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 ST14Q9Y5Y6 855 aa9.16□□□□□ -0.94
SMAD3-215ENST00000560424 V9GYY5 206 aaPredicted RBP9.16□□□□□ -0.94
SMAD3-215ENST00000560424 OTOGQ6ZRI0 2925 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 A0A1W2PQ67 120 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 TCRBV7S2A1N4TA0A589 114 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 F5H423 210 aaPredicted RBP9.15□□□□□ -0.94
SMAD3-215ENST00000560424 APOC4-APOC2K7ER74 178 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 TOX3O15405 576 aaPredicted RBP9.15□□□□□ -0.94
SMAD3-215ENST00000560424 LRRTM2O43300 516 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 RAD51CO43502 376 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 RRP9O43818 475 aaKnown RBP9.15□□□□□ -0.94
SMAD3-215ENST00000560424 CREB3O43889 395 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 ZNF189O75820 626 aaPredicted RBP9.15□□□□□ -0.94
SMAD3-215ENST00000560424 TMEM63AO94886 807 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 APOC2P02655 101 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 RHOXF2BP0C7M4 288 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 ZFXP17010 805 aaPredicted RBP9.15□□□□□ -0.94
SMAD3-215ENST00000560424 GM2AP17900 193 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 VIPR1P32241 457 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 PTGIRP43119 386 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 CSNK1DP48730 415 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 CDH6P55285 790 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 GFERP55789 205 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 ZRSR2Q15696 482 aaKnown RBP9.15□□□□□ -0.94
SMAD3-215ENST00000560424 CNGA3Q16281 694 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 KYNUQ16719 465 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 SMTNL2Q2TAL5 461 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 PYCR3Q53H96 274 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 ARTNQ5T4W7 220 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 SLC9A4Q6AI14 798 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 CCDC137Q6PK04 289 aaKnown RBP9.15□□□□□ -0.94
SMAD3-215ENST00000560424 CHST15Q7LFX5 561 aaPredicted RBP9.15□□□□□ -0.94
SMAD3-215ENST00000560424 TRIM48Q8IWZ4 208 aa9.15□□□□□ -0.94
SMAD3-215ENST00000560424 RBMXL3Q8N7X1 1067 aaKnown RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms