RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 FAM46DQ8NEK8 389 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 OR4C6Q8NH72 309 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 HM13Q8TCT9 377 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 RHBDD1Q8TEB9 315 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 LPGAT1Q92604 370 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 SGF29Q96ES7 293 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 CDC6Q99741 560 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 WDR83Q9BRX9 315 aaKnown RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 BOCQ9BWV1 1114 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 DPEP2Q9H4A9 486 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 KLC4Q9NSK0 619 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 UCKL1Q9NWZ5 548 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 IL1RAPL1Q9NZN1 696 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 TAAR2Q9P1P5 351 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 FTSJ1Q9UET6 329 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 FBXO5Q9UKT4 447 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 PNMA8BQ9ULN7 279 aaPredicted RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 CORO1CQ9ULV4 474 aaPredicted RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 DNAJC16Q9Y2G8 782 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 PRKAB1Q9Y478 270 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 ADAMTS9Q9P2N4 1935 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 C17orf113A0A1B0GUU1 675 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 TCRBV9S1A1TA0A576 114 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 OR5K4A6NMS3 321 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 B4DGG1 531 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 LIN7AO14910 233 aaPredicted RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 YY2O15391 372 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 ZW10O43264 779 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 OR1I1O60431 355 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 POP7O75817 140 aaKnown RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 APOA4P06727 396 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 SLC35G4P0C7Q5 338 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 PKMP14618 531 aaKnown RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 PBLDP30039 288 aaPredicted RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 SSTR1P30872 391 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 CA5AP35218 305 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 LEPRP48357 1165 aaKnown RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 DUSP3P51452 185 aaPredicted RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 DAB2P98082 770 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 CTBP1Q13363 440 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 TCEA2Q15560 299 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 DEFB133Q30KQ1 61 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 KCTD16Q68DU8 428 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 DBX2Q6ZNG2 339 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 C3orf62Q6ZUJ4 267 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 CYS1Q717R9 158 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 TRMT10CQ7L0Y3 403 aaKnown RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 KANSL1Q7Z3B3 1105 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 LDB1Q86U70 411 aaPredicted RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 ZNF547Q8IVP9 402 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 DENND6AQ8IWF6 608 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 SLC25A45Q8N413 288 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 CLDN19Q8N6F1 224 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 EID2Q8N6I1 236 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 C2CD4AQ8NCU7 369 aaPredicted RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 OR6C4Q8NGE1 309 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 OR2L2Q8NH16 312 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 ELMO1Q92556 727 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 TMEM159Q96B96 161 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 CYTH2Q99418 400 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 CCM2Q9BSQ5 444 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 RTKNQ9BST9 563 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 CDC42EP4Q9H3Q1 356 aaKnown RBP9.91□□□□□ -0.82
USP3-216ENST00000559873 MOCS1Q9NZB8 636 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 NINJ2Q9NZG7 142 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 ACSL5Q9ULC5 683 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 KCNK6Q9Y257 313 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 PLXNB3Q9ULL4 1909 aa9.91□□□□□ -0.82
USP3-216ENST00000559873 ASCC3Q8N3C0 2202 aaKnown RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 KIR2DS5A0A0G2JLQ3 304 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 A0A0G2JNG1 304 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 KIR2DS3K7RE56 304 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 IFRD1O00458 451 aaPredicted RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 SNX2O60749 519 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 FUCA1P04066 466 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 CELA2BP08218 269 aaPredicted RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 ABHD2P08910 425 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 F3P13726 295 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 CD59P13987 128 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 CSRP1P21291 193 aaKnown RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 AK4P27144 223 aaPredicted RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 RPA4Q13156 261 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 BOP1Q14137 746 aaKnown RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 KIR2DS5Q14953 304 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 NR0B2Q15466 257 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 KLHL38Q2WGJ6 581 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 TTLL9Q3SXZ7 439 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 TEDDM1Q5T9Z0 273 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 AGAP9Q5VTM2 703 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 UGT3A1Q6NUS8 523 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 WDR93Q6P2C0 686 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 TRMT10BQ6PF06 316 aaKnown RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 C11orf96Q7Z7L8 435 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 CTAGE3PQ8IX95 158 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 UNC5BQ8IZJ1 945 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 CNPY4Q8N129 248 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 FAM181AQ8N9Y4 354 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 MAPK15Q8TD08 544 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 ZDHHC1Q8WTX9 485 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 ASZ1Q8WWH4 475 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms