RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 LOXL2Q9Y4K0 774 aa4.3□□□□□ -1.72
SNX1-205ENST00000559339 PCDHB11Q9Y5F2 797 aa4.3□□□□□ -1.72
SNX1-205ENST00000559339 ST14Q9Y5Y6 855 aa4.3□□□□□ -1.72
SNX1-205ENST00000559339 COLEC10Q9Y6Z7 277 aa4.3□□□□□ -1.72
SNX1-205ENST00000559339 ACACAQ13085 2346 aa4.3□□□□□ -1.72
SNX1-205ENST00000559339 CELSR3Q9NYQ7 3312 aa4.3□□□□□ -1.72
SNX1-205ENST00000559339 IGF2RP11717 2491 aa4.3□□□□□ -1.72
SNX1-205ENST00000559339 TDRD6O60522 2096 aaKnown RBP4.3□□□□□ -1.72
SNX1-205ENST00000559339 CACNA1BQ00975 2339 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 MAP1BP46821 2468 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 FRYQ5TBA9 3013 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 A0A087WV48 116 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 IGHV5-10-1A0A0J9YXX1 117 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 MAGEB16A2A368 324 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CTAGE9A4FU28 777 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 A6NCN8 305 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 LILRA5A6NI73 299 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 OR52A4PA6NMU1 304 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 AGAP14A8MT82 685 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 TAF4O00268 1085 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CES2O00748 559 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 GAPDHSO14556 408 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 NVLO15381 856 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 TOX3O15405 576 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 GPR39O43194 453 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 KLK10O43240 276 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 MAP3K7O43318 606 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 B4GAT1O43505 415 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 KDM1AO60341 852 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 RASSF9O75901 435 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 UBXN7O94888 489 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 AP2A2O94973 939 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 EML2O95834 649 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 FTH1P02794 183 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CAPNS1P04632 268 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 OR56A5P0C7T3 313 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 ZSCAN5DPP0CG00 497 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 ETS1P14921 441 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CD82P27701 267 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PBLDP30039 288 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 RPL22P35268 128 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 EIF2S3P41091 472 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 PAFAH1B1P43034 410 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 KCNJ1P48048 391 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 NPY2RP49146 381 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 FNTAP49354 379 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 TTPAP49638 278 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PRLHRP49683 370 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PDX1P52945 283 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CTSCP53634 463 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 LIMK2P53671 638 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 UCNP55089 124 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SESN2P58004 480 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 RAB15P59190 212 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 GNG11P61952 73 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 XIAPP98170 497 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 ZFP36L1Q07352 338 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 CCDC173Q0VFZ6 552 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 GPS1Q13098 491 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PRKAA1Q13131 559 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 MSLNQ13421 630 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 NFE2L1Q14494 772 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 ITIH4Q14624 930 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PTPRCAPQ14761 206 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PLCL1Q15111 1095 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PPP1R7Q15435 360 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SIX1Q15475 284 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 BCL7AQ4VC05 210 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 KHDC1Q4VXA5 237 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 CCDC38Q502W7 563 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 FASTKD1Q53R41 847 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 PCID2Q5JVF3 399 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SNAP47Q5SQN1 464 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 NKAIN2Q5VXU1 208 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 METRNLQ641Q3 311 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 ARMC6Q6NXE6 501 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CASC4Q6P4E1 433 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 TMEM71Q6P5X7 295 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CCDC137Q6PK04 289 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 PACS1Q6VY07 963 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 TMEM26Q6ZUK4 368 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 C11orf96Q7Z7L8 435 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 B3GNT8Q7Z7M8 397 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PCGF5Q86SE9 256 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SDCCAG8Q86SQ7 713 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 SERPINA9Q86WD7 417 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 ZNF761Q86XN6 746 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 FAM129CQ86XR2 697 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 REXO1L1PQ8IX06 675 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CFAP206Q8IYR0 622 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SLC35F6Q8N357 371 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 RASGEF1CQ8N431 466 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PRELID2Q8N945 189 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 ZNF454Q8N9F8 522 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 RCBTB1Q8NDN9 531 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 OR6P1Q8NGX9 317 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 OR4L1Q8NH43 312 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SNIP1Q8TAD8 396 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 GABPB2Q8TAK5 448 aaPredicted RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms