RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 PAIP2Q9BPZ3 127 aaKnown RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 CCM2Q9BSQ5 444 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 EIF2B3Q9NR50 452 aaKnown RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 RAB6BQ9NRW1 208 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SPATS2LQ9NUQ6 558 aaKnown RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 BFARQ9NZS9 450 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SPO11Q9Y5K1 396 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 RNF215Q9Y6U7 377 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 COLEC10Q9Y6Z7 277 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 U3KQA8 63 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 DMDP11532 3685 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 TPRP12270 2363 aaKnown RBP8.53□□□□□ -1.04
USP3-208ENST00000558285 IFRD1O00458 451 aaPredicted RBP8.53□□□□□ -1.04
USP3-208ENST00000558285 AP2A2O94973 939 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 APRTP07741 180 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 SLC35G4P0C7Q5 338 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 TCP1P17987 556 aaKnown RBP8.53□□□□□ -1.04
USP3-208ENST00000558285 PAMP19021 973 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 AK4P27144 223 aaPredicted RBP8.53□□□□□ -1.04
USP3-208ENST00000558285 ABCG1P45844 678 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 PRAMEP78395 509 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 CCL7P80098 99 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 CACNG1Q06432 222 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 NFATC2Q13469 925 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 SQSTM1Q13501 440 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 PDCD2Q16342 344 aaPredicted RBP8.53□□□□□ -1.04
USP3-208ENST00000558285 AMZ1Q400G9 498 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 ATP13A5Q4VNC0 1218 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 C3orf38Q5JPI3 329 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 GPRC6AQ5T6X5 926 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 ARMC6Q6NXE6 501 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 IYDQ6PHW0 289 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 FOXR1Q6PIV2 292 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 RFLNAQ6ZTI6 216 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 TAS2R42Q7RTR8 314 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 ADGRG6Q86SQ4 1221 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 C17orf82Q86X59 251 aaPredicted RBP8.53□□□□□ -1.04
USP3-208ENST00000558285 OTUD6BQ8N6M0 293 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 AGBL5Q8NDL9 886 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 OR4D9Q8NGE8 314 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 PTCD2Q8WV60 388 aaKnown RBP8.53□□□□□ -1.04
USP3-208ENST00000558285 ZFPM2Q8WW38 1151 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 FAM118BQ9BPY3 351 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 APOL2Q9BQE5 337 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 ASPSCR1Q9BZE9 553 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 DPH1Q9BZG8 443 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 ETAA1Q9NY74 926 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 CPNE7Q9UBL6 633 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 CDC23Q9UJX2 597 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 RIMKLBQ9ULI2 386 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 CNOT6Q9ULM6 557 aaKnown RBP8.53□□□□□ -1.04
USP3-208ENST00000558285 KCNK6Q9Y257 313 aa8.53□□□□□ -1.04
USP3-208ENST00000558285 WDR87Q6ZQQ6 2873 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 LILRA5A6NI73 299 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 H7C0S8 307 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 PGRMC1O00264 195 aaKnown RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 CES2O00748 559 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 BRINP1O60477 761 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 SUN1O94901 812 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 FTH1P02794 183 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 AMD1P17707 334 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 XRCC1P18887 633 aaPredicted RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 ADRA1DP25100 572 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 NPY2RP49146 381 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 MAZP56270 477 aaKnown RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 RAB15P59190 212 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 GNG11P61952 73 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 BASP1P80723 227 aaKnown RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 DMPKQ09013 629 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 SEMA5AQ13591 1074 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 SNX1Q13596 522 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 IHHQ14623 411 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 PTPRRQ15256 657 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 RBBP5Q15291 538 aaKnown RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 OASLQ15646 514 aaKnown RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 ZRANB3Q5FWF4 1079 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 AADACL2Q6P093 401 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 TMEM71Q6P5X7 295 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 WDR74Q6RFH5 385 aaPredicted RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 AFTPHQ6ULP2 937 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 NRROSQ86YC3 692 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 JAMLQ86YT9 394 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 KLHDC8BQ8IXV7 354 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 NAGSQ8N159 534 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 PELI3Q8N2H9 469 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 CCL4L1Q8NHW4 92 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 GSDMBQ8TAX9 411 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 MDM1Q8TC05 714 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 SLC37A2Q8TED4 501 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 C1orf54Q8WWF1 131 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 KCNE4Q8WWG9 221 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 N4BP2L2Q92802 583 aaPredicted RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 MRRFQ96E11 262 aaKnown RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 ZDHHC12Q96GR4 267 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 ATXN7L3BQ96GX2 97 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 TEFMQ96QE5 360 aaKnown RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 SMIM14Q96QK8 99 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 WDR24Q96S15 920 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 RANBP9Q96S59 729 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 ZPBPQ9BS86 351 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms