RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NIPSNAP2O75323 286 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 AP2A2O94973 939 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 EML2O95834 649 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 CTSEP14091 401 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 RPS3P23396 243 aaKnown RBP eCLIP12.61□□□□□ -0.396e-7■■■□□ 16.5
SHMT2-227ENST00000557269 PPARGP37231 505 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 CCT8P50990 548 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 BLKP51451 505 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 PGGT1BP53609 377 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 ATXN3P54252 364 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 TIAL1Q01085 375 aaKnown RBP eCLIP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 SLC29A2Q14542 456 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 AASDHQ4L235 1098 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 RBM20Q5T481 1227 aaKnown RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 RNF187Q5TA31 235 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 KIAA0408Q6ZU52 694 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 CTAGE3PQ8IX95 158 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 OXR1Q8N573 874 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 PPM1NQ8N819 430 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 MYRIPQ8NFW9 859 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 SCG3Q8WXD2 468 aaKnown RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 FAM136AQ96C01 138 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 MRRFQ96E11 262 aaKnown RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 LINC00615Q96LM1 132 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 ACSS3Q9H6R3 686 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 KLC4Q9NSK0 619 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 SPATS2LQ9NUQ6 558 aaKnown RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 SPASTQ9UBP0 616 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 FAM8A1Q9UBU6 413 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 DNAJC16Q9Y2G8 782 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 LAMA1P25391 3075 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 ZFHX2Q9C0A1 2572 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-227ENST00000557269 TDRD6O60522 2096 aaKnown RBP12.6□□□□□ -0.39
SHMT2-227ENST00000557269 MGAT4DA6NG13 374 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 C4orf47A7E2U8 309 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 TRIM38O00635 465 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 FFAR2O15552 330 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 TRIM16O95361 564 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 SHBGP04278 402 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 PKMP14618 531 aaKnown RBP12.6□□□□□ -0.39
SHMT2-227ENST00000557269 MCM3P25205 808 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 CCR7P32248 378 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 PHBP35232 272 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 CD151P48509 253 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 ADARP55265 1226 aaKnown RBP12.6□□□□□ -0.39
SHMT2-227ENST00000557269 CDKN2DP55273 166 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 ARHGAP8P85298 464 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 NFE2L1Q14494 772 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 INSCQ1MX18 579 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 DEFB133Q30KQ1 61 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 PTRHD1Q6GMV3 140 aaKnown RBP12.6□□□□□ -0.39
SHMT2-227ENST00000557269 EMBQ6PCB8 327 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 SLC30A9Q6PML9 568 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 TAF8Q7Z7C8 310 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 GALNT7Q86SF2 657 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 AMZ2Q86W34 360 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 SLC26A11Q86WA9 606 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 ZC3HC1Q86WB0 502 aaKnown RBP12.6□□□□□ -0.39
SHMT2-227ENST00000557269 LRRC6Q86X45 466 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 CAVIN3Q969G5 261 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 ATXN7L3BQ96GX2 97 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 ZNF514Q96K75 400 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-227ENST00000557269 SLC30A3Q99726 388 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 TIMM29Q9BSF4 260 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 CCM2Q9BSQ5 444 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 AARSD1Q9BTE6 412 aaKnown RBP12.6□□□□□ -0.39
SHMT2-227ENST00000557269 TBC1D29Q9UFV1 150 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 BTBD3Q9Y2F9 522 aa12.6□□□□□ -0.39
SHMT2-227ENST00000557269 DNMT3AQ9Y6K1 912 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-227ENST00000557269 A0A087WUV0 522 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-227ENST00000557269 LMO7DNF2Z398 122 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 PFDN6O15212 129 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 PCDHGA12O60330 932 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 ESR1P03372 595 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 TUBBP07437 444 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 ABHD2P08910 425 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 OR56A5P0C7T3 313 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 CD59P13987 128 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 GCAP28676 217 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 HSD17B3P37058 310 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 ACTR1BP42025 376 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 ACTR1AP61163 376 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 ILF3Q12906 894 aaKnown RBP eCLIP12.59□□□□□ -0.39
SHMT2-227ENST00000557269 LRP8Q14114 963 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 BRD3Q15059 726 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 UAP1L1Q3KQV9 507 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 DBX2Q6ZNG2 339 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 CFAP206Q8IYR0 622 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 KIAA2013Q8IYS2 634 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 FSTL5Q8N475 847 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-227ENST00000557269 OR2L2Q8NH16 312 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 GIMAP7Q8NHV1 300 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 UBLCP1Q8WVY7 318 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-227ENST00000557269 CDKL2Q92772 493 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 CYTH2Q99418 400 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 GSDMCQ9BYG8 508 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 TMEM9BQ9NQ34 198 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 PRDM8Q9NQV8 689 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 SCHIP1Q9P0W5 487 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-227ENST00000557269 TAAR2Q9P1P5 351 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms