RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 BRSK1Q8TDC3 778 aa12.39□□□□□ -0.43
SHMT2-223ENST00000556689 TTC25Q96NG3 672 aa12.39□□□□□ -0.43
SHMT2-223ENST00000556689 VPS35Q96QK1 796 aa12.39□□□□□ -0.43
SHMT2-223ENST00000556689 CD180Q99467 661 aa12.39□□□□□ -0.43
SHMT2-223ENST00000556689 ZNF670Q9BS34 389 aa12.39□□□□□ -0.43
SHMT2-223ENST00000556689 MFRPQ9BY79 579 aa12.39□□□□□ -0.43
SHMT2-223ENST00000556689 XPO4Q9C0E2 1151 aaKnown RBP12.39□□□□□ -0.43
SHMT2-223ENST00000556689 TSPY26PQ9H489 355 aa12.39□□□□□ -0.43
SHMT2-223ENST00000556689 LUZP4Q9P127 313 aa12.39□□□□□ -0.43
SHMT2-223ENST00000556689 ZNF711Q9Y462 761 aa12.39□□□□□ -0.43
SHMT2-223ENST00000556689 SSU72P8A0A1W2PR75 194 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 TLCD2A6NGC4 264 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 A6NL46 340 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 TMEM63AO94886 807 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 CLDN1O95832 211 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 RAB40ALP0C0E4 278 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 DCTP40126 519 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 GSDMDP57764 484 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 TUBB4BP68371 445 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 TYRO3Q06418 890 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 GPS2Q13227 327 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 TUBB2AQ13885 445 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 RPE65Q16518 533 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 FILIP1LQ4L180 1135 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 DNTTIP2Q5QJE6 756 aaKnown RBP12.38□□□□□ -0.43
SHMT2-223ENST00000556689 CCDC70Q6NSX1 233 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 CERS6Q6ZMG9 384 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 NT5DC3Q86UY8 548 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 AMZ2Q86W34 360 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 Q8NA96 180 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 ADAMTS17Q8TE56 1095 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 PNPLA2Q96AD5 504 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 TRIB3Q96RU7 358 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 SRPK1Q96SB4 655 aaKnown RBP12.38□□□□□ -0.43
SHMT2-223ENST00000556689 TUBB2BQ9BVA1 445 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 CHST8Q9H2A9 424 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 HRASLS2Q9NWW9 162 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 TMPRSS11EQ9UL52 423 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 UNC79Q9P2D8 2635 aa12.38□□□□□ -0.43
SHMT2-223ENST00000556689 ESPL1Q14674 2120 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 CREBBPQ92793 2442 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 MYO9AB2RTY4 2548 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 MEN1O00255 615 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 POP7O75817 140 aaKnown RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 ZBTB11O95625 1053 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 CYP1A2P05177 515 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 GJC1P36383 396 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 VAV2P52735 878 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 IFI35P80217 286 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 CDK18Q07002 472 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 DMPKQ09013 629 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 ZBTB17Q13105 803 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 PLCL1Q15111 1095 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 GPR19Q15760 415 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 PCSK7Q16549 785 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 ATP13A5Q4VNC0 1218 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 PLEKHS1Q5SXH7 462 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 TMTC4Q5T4D3 741 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 SLC6A19Q695T7 634 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 MED25Q71SY5 747 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 TTC30BQ8N4P2 665 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 PQLC3Q8N755 202 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 RBMXL3Q8N7X1 1067 aaKnown RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 TMEM102Q8N9M5 508 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 SLC38A9Q8NBW4 561 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 GPR150Q8NGU9 434 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 ZNF501Q96CX3 271 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 IMP4Q96G21 291 aaKnown RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 ZNF830Q96NB3 372 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 LRFN5Q96NI6 719 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 NUDT9Q9BW91 350 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 NLNQ9BYT8 704 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 CBX8Q9HC52 389 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 BPIFA1Q9NP55 256 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 ERRFI1Q9UJM3 462 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 TCFL5Q9UL49 500 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 SNX7Q9UNH6 387 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 PSMD13Q9UNM6 376 aa12.37□□□□□ -0.43
SHMT2-223ENST00000556689 BZW2Q9Y6E2 419 aaKnown RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 DNMT3AQ9Y6K1 912 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-223ENST00000556689 TNRC6AQ8NDV7 1962 aaKnown RBP12.36□□□□□ -0.43
SHMT2-223ENST00000556689 OR5K3A6NET4 321 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 AURKAO14965 403 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 CBX6O95503 412 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 RRADP55042 308 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 ITGA1P56199 1179 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 PPIDQ08752 370 aaKnown RBP12.36□□□□□ -0.43
SHMT2-223ENST00000556689 AP1B1Q10567 949 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 NR6A1Q15406 480 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 LCN10Q6JVE6 187 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 ARMC6Q6NXE6 501 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 OOSP2Q86WS3 158 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 DSELQ8IZU8 1212 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 ENDOVQ8N8Q3 282 aaKnown RBP12.36□□□□□ -0.43
SHMT2-223ENST00000556689 GLIS1Q8NBF1 620 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 ZFPM2Q8WW38 1151 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 CPT1BQ92523 772 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 FAF2Q96CS3 445 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 C19orf60Q96EN9 201 aa12.36□□□□□ -0.43
SHMT2-223ENST00000556689 TCTN2Q96GX1 697 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms