RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ARMC12Q5T9G4 340 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 RAET1GQ6H3X3 334 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 TCTN3Q6NUS6 607 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 SFRP1Q8N474 314 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 ATPAF2Q8N5M1 289 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 AOPEPQ8N6M6 819 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 GALNT11Q8NCW6 608 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 MAML1Q92585 1016 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 ZNF669Q96BR6 464 aaPredicted RBP9.9□□□□□ -0.82
SCFD1-220ENST00000556486 TCTN2Q96GX1 697 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 AHCYL2Q96HN2 611 aaKnown RBP9.9□□□□□ -0.82
SCFD1-220ENST00000556486 COX14Q96I36 57 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 ELMO2Q96JJ3 720 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 OR2M4Q96R27 311 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 LYSMD1Q96S90 227 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 TM9SF2Q99805 663 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 ADAM19Q9H013 955 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 PCDH18Q9HCL0 1135 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.9□□□□□ -0.82
SCFD1-220ENST00000556486 CROTQ9UKG9 612 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 DNPEPQ9ULA0 475 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 KCTD3Q9Y597 815 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 OAS3Q9Y6K5 1087 aaKnown RBP9.9□□□□□ -0.82
SCFD1-220ENST00000556486 RPS6KL1Q9Y6S9 549 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 CELSR1Q9NYQ6 3014 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 A0A0U1RQS6 177 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 EML2O95834 649 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 PDHA1P08559 390 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 ESRRAP11474 423 aaPredicted RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 ACTR1BP42025 376 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 STC1P52823 247 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 ACTR1AP61163 376 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 RPL26P61254 145 aaKnown RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 MC2RQ01718 297 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 FOXM1Q08050 763 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 KLHL30Q0D2K2 578 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 ABHD18Q0P651 414 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 GALNT2Q10471 571 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 PTPRRQ15256 657 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 SMTNL2Q2TAL5 461 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 CPZQ66K79 652 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 HGSNATQ68CP4 663 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 LRRC66Q68CR7 880 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 MRM1Q6IN84 353 aaKnown RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 TMEM71Q6P5X7 295 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 WDR74Q6RFH5 385 aaPredicted RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 CEACAM20Q6UY09 585 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 MARK2Q7KZI7 788 aaKnown RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 MAMDC2Q7Z304 686 aaPredicted RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 TSPAN33Q86UF1 283 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 TRIM74Q86UV6 250 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 NDUFAF2Q8N183 169 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 GALNT6Q8NCL4 622 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 NSMCE1Q8WV22 266 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 NCSTNQ92542 709 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 SYN2Q92777 582 aaPredicted RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 AP2M1Q96CW1 435 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 TSGA13Q96PP4 275 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 POLR1EQ9GZS1 481 aaKnown RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 TWSG1Q9GZX9 223 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 ABCG8Q9H221 673 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 VPS18Q9P253 973 aa9.89□□□□□ -0.83
SCFD1-220ENST00000556486 RPL26L1Q9UNX3 145 aaKnown RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 BZW2Q9Y6E2 419 aaKnown RBP9.89□□□□□ -0.83
SCFD1-220ENST00000556486 A0A1W2PQJ5 194 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 A6NCN8 305 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 SMTNL1A8MU46 457 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 TCP11X1B4DZS4 312 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 DLGAP3O95886 979 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 GARSP41250 739 aaKnown RBP9.88□□□□□ -0.83
SCFD1-220ENST00000556486 GPR1P46091 355 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 ARSEP51690 589 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 MAXP61244 160 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 MC1RQ01726 317 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 NFATC2Q13469 925 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 IHHQ14623 411 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 PAFAH1B3Q15102 231 aaKnown RBP9.88□□□□□ -0.83
SCFD1-220ENST00000556486 FILIP1LQ4L180 1135 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 C1QL3Q5VWW1 255 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 TXNRD3NBQ6F5E7 133 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 EXD1Q8NHP7 514 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 SLC37A2Q8TED4 501 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 TEFMQ96QE5 360 aaKnown RBP9.88□□□□□ -0.83
SCFD1-220ENST00000556486 RUFY1Q96T51 708 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 SLC38A3Q99624 504 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 EFHD1Q9BUP0 239 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 TDRD1Q9BXT4 1180 aaKnown RBP9.88□□□□□ -0.83
SCFD1-220ENST00000556486 ULBP3Q9BZM4 244 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 SARS2Q9NP81 518 aaKnown RBP9.88□□□□□ -0.83
SCFD1-220ENST00000556486 HAUS2Q9NVX0 235 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 IP6K2Q9UHH9 426 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 ERRFI1Q9UJM3 462 aaPredicted RBP9.88□□□□□ -0.83
SCFD1-220ENST00000556486 G3BP2Q9UN86 482 aaKnown RBP9.88□□□□□ -0.83
SCFD1-220ENST00000556486 POLHQ9Y253 713 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 TMEM98Q9Y2Y6 226 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 TMEM184BQ9Y519 407 aaPredicted RBP9.88□□□□□ -0.83
SCFD1-220ENST00000556486 HIVEP3Q5T1R4 2406 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 C2CD3Q4AC94 2353 aa9.88□□□□□ -0.83
SCFD1-220ENST00000556486 PIPSLA2A3N6 862 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms