RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TEFMQ96QE5 360 aaKnown RBP16.04■□□□□ 0.16
VPS29-207ENST00000549970 APMAPQ9HDC9 416 aa16.04■□□□□ 0.16
VPS29-207ENST00000549970 WASH6PQ9NQA3 447 aa16.04■□□□□ 0.16
VPS29-207ENST00000549970 SMOXQ9NWM0 555 aa16.04■□□□□ 0.16
VPS29-207ENST00000549970 PACSIN2Q9UNF0 486 aaPredicted RBP16.04■□□□□ 0.16
VPS29-207ENST00000549970 AAR2Q9Y312 384 aaKnown RBP16.04■□□□□ 0.16
VPS29-207ENST00000549970 KCTD3Q9Y597 815 aa16.04■□□□□ 0.16
VPS29-207ENST00000549970 PIEZO2Q9H5I5 2752 aa16.04■□□□□ 0.16
VPS29-207ENST00000549970 A0A0U1RQJ8 604 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 C9P02748 559 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 MSH3P20585 1137 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 GPR18Q14330 331 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 NFE2L1Q14494 772 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 TAF1AQ15573 450 aaPredicted RBP16.03■□□□□ 0.16
VPS29-207ENST00000549970 CEACAM20Q6UY09 585 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 RANBP10Q6VN20 620 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 DET1Q7L5Y6 550 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 TMEM139Q8IV31 216 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 BEND7Q8N7W2 519 aaPredicted RBP16.03■□□□□ 0.16
VPS29-207ENST00000549970 NAT14Q8WUY8 206 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 RSC1A1Q92681 617 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 C9orf72Q96LT7 481 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 ARHGAP9Q9BRR9 750 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 DESI2Q9BSY9 194 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 SLC40A1Q9NP59 571 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 FBXO8Q9NRD0 319 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 FKBPLQ9UIM3 349 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 PSMD13Q9UNM6 376 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 CFAP46Q8IYW2 2715 aa16.03■□□□□ 0.16
VPS29-207ENST00000549970 ZNF106Q9H2Y7 1883 aaKnown RBP16.03■□□□□ 0.16
VPS29-207ENST00000549970 GCN1Q92616 2671 aaKnown RBP16.02■□□□□ 0.16
VPS29-207ENST00000549970 BOD1L1Q8NFC6 3051 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 C5orf60A6NFR6 353 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 CAPN5O15484 640 aaPredicted RBP16.02■□□□□ 0.16
VPS29-207ENST00000549970 KCNJ13O60928 360 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 FTCDO95954 541 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 ANKRD34CP0C6C1 535 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 PLA2G2AP14555 144 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 LIFP15018 202 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 CAPZBP47756 277 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 LEPRP48357 1165 aaKnown RBP16.02■□□□□ 0.16
VPS29-207ENST00000549970 SEPHS1P49903 392 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 TMPRSS15P98073 1019 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 DMPKQ09013 629 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 KIF5AQ12840 1032 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 SPARCL1Q14515 664 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 LONRF2Q1L5Z9 754 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 LINC00303Q3SY05 128 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 FNBP1LQ5T0N5 605 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 FAM83HQ6ZRV2 1179 aaPredicted RBP16.02■□□□□ 0.16
VPS29-207ENST00000549970 RBM12BQ8IXT5 1001 aaKnown RBP16.02■□□□□ 0.16
VPS29-207ENST00000549970 SYCE1Q8N0S2 351 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 UBL4BQ8N7F7 174 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 SPC24Q8NBT2 197 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 OR13C4Q8NGS5 318 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 GPR150Q8NGU9 434 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 RNF31Q96EP0 1072 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 TBL1YQ9BQ87 522 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 ASB8Q9H765 288 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 PILRAQ9UKJ1 303 aa16.02■□□□□ 0.16
VPS29-207ENST00000549970 ZNF462Q96JM2 2506 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 GOLGA6L9A6NEM1 432 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 POLR1CO15160 346 aaPredicted RBP16.01■□□□□ 0.15
VPS29-207ENST00000549970 RASSF9O75901 435 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 SRP72O76094 671 aaKnown RBP16.01■□□□□ 0.15
VPS29-207ENST00000549970 CRTAMO95727 393 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 ITGB2P05107 769 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 FOXM1Q08050 763 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 IRGCQ6NXR0 463 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 NLGN4XQ8N0W4 816 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 EXD3Q8N9H8 876 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 NLGN4YQ8NFZ3 816 aaPredicted RBP16.01■□□□□ 0.15
VPS29-207ENST00000549970 ZPBPQ9BS86 351 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 SIDT1Q9NXL6 827 aaKnown RBP16.01■□□□□ 0.15
VPS29-207ENST00000549970 FAM8A1Q9UBU6 413 aa16.01■□□□□ 0.15
VPS29-207ENST00000549970 DNMT3AQ9Y6K1 912 aaPredicted RBP16.01■□□□□ 0.15
VPS29-207ENST00000549970 KIF1CO43896 1103 aaKnown RBP16■□□□□ 0.15
VPS29-207ENST00000549970 STK17BO94768 372 aa16■□□□□ 0.15
VPS29-207ENST00000549970 SH3BP2P78314 561 aa16■□□□□ 0.15
VPS29-207ENST00000549970 MSLNQ13421 630 aaPredicted RBP16■□□□□ 0.15
VPS29-207ENST00000549970 RPE65Q16518 533 aa16■□□□□ 0.15
VPS29-207ENST00000549970 TBR1Q16650 682 aa16■□□□□ 0.15
VPS29-207ENST00000549970 ARHGEF18Q6ZSZ5 1173 aa16■□□□□ 0.15
VPS29-207ENST00000549970 FAM92BQ6ZTR7 304 aa16■□□□□ 0.15
VPS29-207ENST00000549970 TIPARPQ7Z3E1 657 aaKnown RBP16■□□□□ 0.15
VPS29-207ENST00000549970 TXLNBQ8N3L3 684 aa16■□□□□ 0.15
VPS29-207ENST00000549970 FAM71DQ8N9W8 422 aa16■□□□□ 0.15
VPS29-207ENST00000549970 TTC13Q8NBP0 860 aa16■□□□□ 0.15
VPS29-207ENST00000549970 ZNF514Q96K75 400 aaPredicted RBP16■□□□□ 0.15
VPS29-207ENST00000549970 PPP1R2P1Q96PQ5 205 aa16■□□□□ 0.15
VPS29-207ENST00000549970 SLC12A9Q9BXP2 914 aa16■□□□□ 0.15
VPS29-207ENST00000549970 ZNF768Q9H5H4 540 aaKnown RBP16■□□□□ 0.15
VPS29-207ENST00000549970 IMP3Q9NV31 184 aaKnown RBP16■□□□□ 0.15
VPS29-207ENST00000549970 CRLS1Q9UJA2 301 aa16■□□□□ 0.15
VPS29-207ENST00000549970 CFAP20Q9Y6A4 193 aaKnown RBP16■□□□□ 0.15
VPS29-207ENST00000549970 MGAT4DA6NG13 374 aa15.99■□□□□ 0.15
VPS29-207ENST00000549970 MIF4GDA9UHW6 222 aaKnown RBP15.99■□□□□ 0.15
VPS29-207ENST00000549970 CCL22O00626 93 aa15.99■□□□□ 0.15
VPS29-207ENST00000549970 TOX3O15405 576 aaPredicted RBP15.99■□□□□ 0.15
VPS29-207ENST00000549970 DDX3YO15523 660 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms