RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 ERVK-8P63133 956 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 KCNA10Q16322 511 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 TRMT10BQ6PF06 316 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 CHST9Q7L1S5 443 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 ZZZ3Q8IYH5 903 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 ZNF347Q96SE7 839 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 GDAP2Q9NXN4 497 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 MSRAQ9UJ68 235 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 ING4Q9UNL4 249 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 ERAL1O75616 437 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 CYP4B1P13584 511 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 RPL4P36578 427 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 LSM3P62310 102 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 PERM1Q5SV97 790 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 BEND5Q7L4P6 421 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 PEG10Q86TG7 708 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 PSMG2Q969U7 264 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 ASB9Q96DX5 294 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 DNAJB9Q9UBS3 223 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 RUVBL1Q9Y265 456 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 SETD1AO15047 1707 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 FADS2O95864 444 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 HSPA7P48741 367 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 PTGES3Q15185 160 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 GPR33Q49SQ1 333 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 LDLRAP1Q5SW96 308 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 IRAK1BP1Q5VVH5 260 aa12.39□□□□□ -0.43
COL4A6-209ENST00000545689 RALGPS2Q86X27 583 aaPredicted RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 CCDC177Q9NQR7 707 aaPredicted RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 WBP11Q9Y2W2 641 aaKnown RBP12.39□□□□□ -0.43
COL4A6-209ENST00000545689 ZNF142P52746 1687 aaPredicted RBP12.38□□□□□ -0.43
COL4A6-209ENST00000545689 DPPA5A6NC42 116 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 GLTPD2A6NH11 291 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 OR4F21O95013 312 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 ANGPTL1O95841 491 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 HLA-DQA2P01906 255 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CCNFP41002 786 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 ATP12AP54707 1039 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 OR5K1Q8NHB7 308 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 SLC13A3Q8WWT9 602 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CMTM6Q9NX76 183 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 FAM53CQ9NYF3 392 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 SEC14L3Q9UDX4 400 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CCDC162PA2VCL2 907 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CXCR6O00574 342 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 IDH3BO43837 385 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CYP4F3Q08477 520 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 SNX20Q7Z614 316 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 LRRC17Q8N6Y2 441 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 SOHLH2Q9NX45 425 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 COL1A1P02452 1464 aaPredicted RBP12.38□□□□□ -0.43
COL4A6-209ENST00000545689 H0YC42 278 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 H3BNH8 94 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 DNTTP04053 509 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 UGT2B4P06133 528 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CAPN1P07384 714 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CHRNGP07510 517 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 SRPRAP08240 638 aaKnown RBP12.38□□□□□ -0.43
COL4A6-209ENST00000545689 ARHGAP1Q07960 439 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 INCA1Q0VD86 236 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 FSTL1Q12841 308 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 RALGPS1Q5JS13 557 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 RFWD3Q6PCD5 774 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 VMP1Q96GC9 406 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 PRICKLE1Q96MT3 831 aaPredicted RBP12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CHID1Q9BWS9 393 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 ZNF282Q9UDV7 671 aaPredicted RBP12.38□□□□□ -0.43
COL4A6-209ENST00000545689 RAB23Q9ULC3 237 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CHURC1-FNTBB4DL54 471 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 ETS2P15036 469 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 KCNE1P15382 129 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CREB1P16220 341 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 ATP13A5Q4VNC0 1218 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 RNF220Q5VTB9 566 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 DENND6AQ8IWF6 608 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 NATD1Q8N6N6 113 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 SIDT2Q8NBJ9 832 aaKnown RBP12.38□□□□□ -0.43
COL4A6-209ENST00000545689 CLHC1Q8NHS4 586 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 FKBPLQ9UIM3 349 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 TEX264Q9Y6I9 313 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 MAGEB17A8MXT2 336 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 SDC2P34741 201 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 MSX2P35548 267 aaPredicted RBP12.38□□□□□ -0.43
COL4A6-209ENST00000545689 NUP188Q5SRE5 1749 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 TPGS2Q68CL5 300 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.38□□□□□ -0.43
COL4A6-209ENST00000545689 OR7D4Q8NG98 312 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 IPCEF1Q8WWN9 437 aaPredicted RBP12.38□□□□□ -0.43
COL4A6-209ENST00000545689 COX4I2Q96KJ9 171 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 LRRC3Q9BY71 257 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 MAN2B2Q9Y2E5 1009 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 PCDHGA11Q9Y5H2 935 aa12.38□□□□□ -0.43
COL4A6-209ENST00000545689 ERN1O75460 977 aaKnown RBP12.37□□□□□ -0.43
COL4A6-209ENST00000545689 SLC25A12O75746 678 aa12.37□□□□□ -0.43
COL4A6-209ENST00000545689 APODP05090 189 aa12.37□□□□□ -0.43
COL4A6-209ENST00000545689 CDH1P12830 882 aa12.37□□□□□ -0.43
COL4A6-209ENST00000545689 C2orf80Q0P641 193 aa12.37□□□□□ -0.43
COL4A6-209ENST00000545689 TMEM44Q2T9K0 475 aa12.37□□□□□ -0.43
COL4A6-209ENST00000545689 SLAIN1Q8ND83 568 aa12.37□□□□□ -0.43
COL4A6-209ENST00000545689 OR6K2Q8NGY2 324 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms