RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 CHRNA6Q15825 494 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 KHDC1Q4VXA5 237 aaKnown RBP12.88□□□□□ -0.35
RTN3-212ENST00000543123 CRTC2Q53ET0 693 aaPredicted RBP12.88□□□□□ -0.35
RTN3-212ENST00000543123 C11orf96Q7Z7L8 435 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 CDKL3Q8IVW4 592 aaPredicted RBP12.88□□□□□ -0.35
RTN3-212ENST00000543123 BEND7Q8N7W2 519 aaPredicted RBP12.88□□□□□ -0.35
RTN3-212ENST00000543123 SPRY4Q9C004 299 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 RAB33BQ9H082 229 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 GOLPH3Q9H4A6 298 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 APMAPQ9HDC9 416 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 OGFRQ9NZT2 677 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 TMPRSS11EQ9UL52 423 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 EFR3BQ9Y2G0 817 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 AAR2Q9Y312 384 aaKnown RBP12.88□□□□□ -0.35
RTN3-212ENST00000543123 SLC30A1Q9Y6M5 507 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 MYO18BQ8IUG5 2567 aa12.88□□□□□ -0.35
RTN3-212ENST00000543123 CCDC66A2RUB6 948 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 F5H423 210 aaPredicted RBP12.87□□□□□ -0.35
RTN3-212ENST00000543123 POP7O75817 140 aaKnown RBP12.87□□□□□ -0.35
RTN3-212ENST00000543123 WISP1O95388 367 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 ZIC2O95409 532 aaPredicted RBP12.87□□□□□ -0.35
RTN3-212ENST00000543123 PRAMEF1O95521 474 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 DLGAP3O95886 979 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 MT-ND3P03897 115 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 RALBP11234 206 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 ITGB6P18564 788 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 MSH3P20585 1137 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 LPOP22079 712 aaPredicted RBP12.87□□□□□ -0.35
RTN3-212ENST00000543123 CTNNA1P35221 906 aaKnown RBP12.87□□□□□ -0.35
RTN3-212ENST00000543123 SEPHS1P49903 392 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 CSRP3P50461 194 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 ADCY2Q08462 1091 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 CDC20Q12834 499 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 SEPT6Q14141 434 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 CLCA4Q14CN2 919 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 PLCL1Q15111 1095 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 NOMO1Q15155 1222 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 FAM182AQ5T1J6 154 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 GPRC6AQ5T6X5 926 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 CACHD1Q5VU97 1274 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 IRGCQ6NXR0 463 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 C6orf15Q6UXA7 325 aaPredicted RBP12.87□□□□□ -0.35
RTN3-212ENST00000543123 RASGRP3Q8IV61 690 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 RASGEF1AQ8N9B8 481 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 STARD8Q92502 1023 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 UBXN4Q92575 508 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 STAMBPL1Q96FJ0 436 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 OR6C1Q96RD1 312 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 PANX2Q96RD6 677 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 HEMGNQ9BXL5 484 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 TRIM10Q9UDY6 481 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 PCDHB3Q9Y5E6 796 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 RPS6KL1Q9Y6S9 549 aa12.87□□□□□ -0.35
RTN3-212ENST00000543123 LOC101059948A0A1B0GTJ6 334 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 C5orf60A6NFR6 353 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 CRTAMO95727 393 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 CCNYL3P0C7X3 344 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 PRKAR1AP10644 381 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 TCN2P20062 427 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 FECHP22830 423 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 PTPN7P35236 360 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 LEPRP48357 1165 aaKnown RBP12.86□□□□□ -0.35
RTN3-212ENST00000543123 MARCKSL1P49006 195 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 NAP1L1P55209 391 aaKnown RBP12.86□□□□□ -0.35
RTN3-212ENST00000543123 TAF1AQ15573 450 aaPredicted RBP12.86□□□□□ -0.35
RTN3-212ENST00000543123 TMEM220Q6QAJ8 160 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 FAM92BQ6ZTR7 304 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 PPP1R3BQ86XI6 285 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 ZNF398Q8TD17 642 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 APOBEC4Q8WW27 367 aaKnown RBP12.86□□□□□ -0.35
RTN3-212ENST00000543123 ZFPM2Q8WW38 1151 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 KLHL6Q8WZ60 621 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 RSC1A1Q92681 617 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 KRT35Q92764 455 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 DCUN1D1Q96GG9 259 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 CD180Q99467 661 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 C19orf43Q9BQ61 176 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 FICDQ9BVA6 458 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 PDE7BQ9NP56 450 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 FEZ2Q9UHY8 353 aaPredicted RBP12.86□□□□□ -0.35
RTN3-212ENST00000543123 KCND3Q9UK17 655 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 ACSL5Q9ULC5 683 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 PCDHA3Q9Y5H8 950 aa12.86□□□□□ -0.35
RTN3-212ENST00000543123 ZNF106Q9H2Y7 1883 aaKnown RBP12.85□□□□□ -0.35
RTN3-212ENST00000543123 OR2AG2A6NM03 316 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 CFAP99D6REC4 459 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 PJA2O43164 708 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 SUV39H1O43463 412 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 UGT1A9O60656 530 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 TJP3O95049 919 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 NDUFA10O95299 355 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 PTMAP06454 111 aaKnown RBP12.85□□□□□ -0.35
RTN3-212ENST00000543123 SLC35G4P0C7Q5 338 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 FGF5P12034 268 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 NELFEP18615 380 aaKnown RBP12.85□□□□□ -0.35
RTN3-212ENST00000543123 UGT1A6P19224 532 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 UGT1A1P22309 533 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 UGT1A4P22310 534 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 RBL1P28749 1068 aa12.85□□□□□ -0.35
RTN3-212ENST00000543123 ARL4DP49703 201 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms