RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 POU6F1Q14863 301 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 EFTUD2Q15029 972 aaKnown RBP eCLIP8.3□□□□□ -1.082e-7■■■■■ 29.5
CHD4-208ENST00000540960 LRRC14Q15048 493 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 PCSK7Q16549 785 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 FAM83EQ2M2I3 478 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 SIRPB2Q5JXA9 342 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 UBAP2Q5T6F2 1119 aaKnown RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 SDE2Q6IQ49 451 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 CXorf57Q6NSI4 855 aaKnown RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 IGF2-ASQ6U949 168 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 AFTPHQ6ULP2 937 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 CERS6Q6ZMG9 384 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 SH2D5Q6ZV89 423 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 RAPH1Q70E73 1250 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 TBC1D1Q86TI0 1168 aaPredicted RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 TMPRSS6Q8IU80 811 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 CRLF3Q8IUI8 442 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 LRRC34Q8IZ02 419 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 STK40Q8N2I9 435 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 AGGF1Q8N302 714 aaeCLIP8.3□□□□□ -1.086e-7■■■□□ 16.8
CHD4-208ENST00000540960 AFAP1L2Q8N4X5 818 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 PAF1Q8N7H5 531 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 C2CD4AQ8NCU7 369 aaPredicted RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 GDAP1Q8TB36 358 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 WFIKKN2Q8TEU8 576 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 LRRN4Q8WUT4 740 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 MOCOSQ96EN8 888 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 ATXN7L3BQ96GX2 97 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 PRICKLE1Q96MT3 831 aaPredicted RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 C7orf26Q96N11 449 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 DEPDC7Q96QD5 511 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 GPR22Q99680 433 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 ELAC2Q9BQ52 826 aaKnown RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 GORASP1Q9BQQ3 440 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 CCDC68Q9H2F9 335 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 ATP13A3Q9H7F0 1226 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 POPDC3Q9HBV1 291 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 RAD18Q9NS91 495 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 IARS2Q9NSE4 1012 aaKnown RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 ABCB8Q9NUT2 735 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 INTS10Q9NVR2 710 aaKnown RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 THAP1Q9NVV9 213 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 UBP1Q9NZI7 540 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 SLC25A13Q9UJS0 675 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 ANAPC2Q9UJX6 822 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 FBXO5Q9UKT4 447 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 TMCO1Q9UM00 188 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 MTO1Q9Y2Z2 717 aaKnown RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 PKP3Q9Y446 797 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 USH1CQ9Y6N9 552 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 PCSK5Q92824 1860 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 CCDC168Q8NDH2 2452 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 A0A096LPK6 155 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 CCT8L1PA6NM43 557 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 F5H423 210 aaPredicted RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 SLCO1B7G3V0H7 640 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 TPP1O14773 563 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 WNT9AO14904 365 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 TSPAN3O60637 253 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 EDF1O60869 148 aaKnown RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 TMCC1O94876 653 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 ADH1CP00326 375 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 GSRP00390 522 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 IGLV3-19P01714 112 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 PRKCGP05129 697 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 BPGMP07738 259 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 RBP1P09455 135 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 LPOP22079 712 aaPredicted RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 PSMA3P25788 255 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 NMBRP28336 390 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 EPHA8P29322 1005 aaPredicted RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 SERPINA4P29622 427 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 SKIV2L2P42285 1042 aaKnown RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 RECQLP46063 649 aaPredicted RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 LEPRP48357 1165 aaKnown RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 TTPAP49638 278 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 SCNN1BP51168 640 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 HNRNPH2P55795 449 aaKnown RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 RAB10P61026 200 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 CRADDP78560 199 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 BCL2L1Q07817 233 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 STX3Q13277 289 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 MTM1Q13496 603 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 MPP2Q14168 576 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 CNGA3Q16281 694 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 KCTD19Q17RG1 926 aaPredicted RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 ARMC12Q5T9G4 340 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 AGAP9Q5VTM2 703 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 CAPRIN2Q6IMN6 1127 aaKnown RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 UGT3A1Q6NUS8 523 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 NUDT18Q6ZVK8 323 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 SRLQ86TD4 932 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 ZC3HC1Q86WB0 502 aaKnown RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 ATCAYQ86WG3 371 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 WDR75Q8IWA0 830 aaKnown RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 SLC25A41Q8N5S1 370 aa8.29□□□□□ -1.08
CHD4-208ENST00000540960 PCDH20Q8N6Y1 951 aaKnown RBP8.29□□□□□ -1.08
CHD4-208ENST00000540960 SPDYE1Q8NFV5 336 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms