RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 RORBQ92753 470 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 KXD1Q9BQD3 176 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 ZSCAN32Q9NX65 697 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 UPK3BL1B0FP48 263 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 UPK3BL2E5RIL1 263 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 KDELR3O43731 214 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 NRP2O60462 931 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 UGT2B15P54855 530 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 SLC1A5Q15758 541 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 ARL13AQ5H913 290 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 IQCKQ8N0W5 287 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 XAGE5Q8WWM1 108 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 NPY6RQ99463 290 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 SFXN1Q9H9B4 322 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 MRPS30Q9NP92 439 aaKnown RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 OR51F1A6NGY5 319 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 MATN4O95460 622 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 POLR2JP52435 117 aaKnown RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 SLC7A2P52569 658 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 C22orf39Q6P5X5 142 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 CPSF7Q8N684 471 aaKnown RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 DCAF4L2Q8NA75 395 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 SLC9A6Q92581 669 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 SLC38A2Q96QD8 506 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 GRIP2Q9C0E4 1043 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 DYTNA2CJ06 578 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 B4DGG1 531 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 OR4F21O95013 312 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 TNFP01375 233 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 GNAZP19086 355 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 INAQ16352 499 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 NRF1Q16656 503 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 FAM43BQ6ZT52 329 aaPredicted RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 C8orf59Q8N0T1 100 aaPredicted RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 NPAS2Q99743 824 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 NUP188Q5SRE5 1749 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 CST1P01037 141 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 RB1P06400 928 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 HNRNPA1P09651 372 aaKnown RBP eCLIP13.94□□□□□ -0.18
USP3-204ENST00000540797 GJA5P36382 358 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 TAS2R41P59536 307 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 SOX4Q06945 474 aaPredicted RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 AAK1Q2M2I8 961 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 GK5Q6ZS86 529 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 C12orf76Q8N812 135 aaPredicted RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 RBM18Q96H35 190 aaKnown RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 PRRG4Q9BZD6 226 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 CPED1A4D0V7 1026 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 COCHO43405 550 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 IGFALSP35858 605 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 CYP1B1Q16678 543 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 OR2T12Q8NG77 320 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 OTUB2Q96DC9 234 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 SAMHD1Q9Y3Z3 626 aaKnown RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 PCDHGA11Q9Y5H2 935 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 MMP20O60882 483 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 TFPIP10646 304 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 PCYT1AP49585 367 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 SRSF11Q05519 484 aaKnown RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 CHRNA6Q15825 494 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 TRMT10BQ6PF06 316 aaKnown RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 ARHGAP36Q6ZRI8 547 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 ARMCX6Q7L4S7 300 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 POP5Q969H6 163 aaKnown RBP13.94□□□□□ -0.18
USP3-204ENST00000540797 MYRFQ9Y2G1 1151 aa13.94□□□□□ -0.18
USP3-204ENST00000540797 LINC00854A0A1B0GVQ3 168 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 MCIDASD6RGH6 385 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 TMEM63AO94886 807 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 CAPN1P07384 714 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 VARSP26640 1264 aaKnown RBP13.93□□□□□ -0.18
USP3-204ENST00000540797 AVPR1BP47901 424 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 CSNK2BP67870 215 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 PROSER1Q86XN7 944 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 PRSS58Q8IYP2 241 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 FSTL5Q8N475 847 aaPredicted RBP13.93□□□□□ -0.18
USP3-204ENST00000540797 PNPT1Q8TCS8 783 aaKnown RBP13.93□□□□□ -0.18
USP3-204ENST00000540797 CDKN2AIPNLQ96HQ2 116 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 CCDC28BQ9BUN5 200 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 C12orf65Q9H3J6 166 aaKnown RBP13.93□□□□□ -0.18
USP3-204ENST00000540797 SCN11AQ9UI33 1791 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.93□□□□□ -0.18
USP3-204ENST00000540797 MTX2O75431 263 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 NDUFS1P28331 727 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 TPP2P29144 1249 aaPredicted RBP13.93□□□□□ -0.18
USP3-204ENST00000540797 SERPINB1P30740 379 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 HSD17B2P37059 387 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 IRF5Q13568 498 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 NR1D2Q14995 579 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 INAVAQ3KP66 663 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 PITRM1Q5JRX3 1037 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 LRRTM4Q86VH4 590 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 SIX5Q8N196 739 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 S100A13Q99584 98 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 HOPXQ9BPY8 73 aaPredicted RBP13.93□□□□□ -0.18
USP3-204ENST00000540797 GTPBP2Q9BX10 602 aaKnown RBP13.93□□□□□ -0.18
USP3-204ENST00000540797 TMEM248Q9NWD8 314 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 EGFL7Q9UHF1 273 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms