RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 FBXL19Q6PCT2 694 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 LMNTD2Q8IXW0 634 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 OR6Y1Q8NGX8 325 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 RDH11Q8TC12 318 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 KLHL29Q96CT2 875 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 PPP1R16AQ96I34 528 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 DNAJC1Q96KC8 554 aaKnown RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TBATAQ96M53 351 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 KLHL32Q96NJ5 620 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 NUDCD1Q96RS6 583 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TDRD1Q9BXT4 1180 aaKnown RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 ZDHHC5Q9C0B5 715 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 MID2Q9UJV3 735 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TRIM33Q9UPN9 1127 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 RUVBL2Q9Y230 463 aaKnown RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 SPAARA0A1B0GVQ0 90 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 A0A1W2PR77 199 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TK2O00142 265 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 BUD23O43709 281 aaKnown RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 DNAJC6O75061 913 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 RASSF9O75901 435 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 ATP5HO75947 161 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 PIGNO95427 931 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 POP4O95707 220 aaKnown RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 CD38P28907 300 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 ABL2P42684 1182 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 GLRBP48167 497 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 SLC12A2P55011 1212 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 AQP5P55064 265 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 ABCE1P61221 599 aaKnown RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 NSUN2Q08J23 767 aaKnown RBP eCLIP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 PTPRCAPQ14761 206 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TEAD4Q15561 434 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 ZNF284Q2VY69 593 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 ASRGL1Q7L266 308 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 PIP4P1Q86T03 277 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TBC1D1Q86TI0 1168 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TRIM69Q86WT6 500 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 PLPP6Q8IY26 295 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TMEM151AQ8N4L1 468 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 OR13C4Q8NGS5 318 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 PIWIL2Q8TC59 973 aaKnown RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 PPP4R1Q8TF05 950 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 SREK1Q8WXA9 508 aaKnown RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 SCYL1Q96KG9 808 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 SORT1Q99523 831 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 NDNQ99608 321 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 WWP1Q9H0M0 922 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 SUDS3Q9H7L9 328 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 PREBQ9HCU5 417 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TM7SF3Q9NS93 570 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 MARCH4Q9P2E8 410 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 RIMKLBQ9ULI2 386 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 DNAJC16Q9Y2G8 782 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 PIKFYVEQ9Y2I7 2098 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 A0A087X1B8 175 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CXorf51AA0A1B0GTR3 108 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 VILLO15195 856 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 SPINT1O43278 529 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 KLHL2O95198 593 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CRTAMO95727 393 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 S1PR4O95977 384 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 PRLP01236 227 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 ADRB1P08588 477 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 SBK3P0C264 359 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 T-ENOLP0DO92 83 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 ARRB2P32121 409 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CTSKP43235 329 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CLDN2P57739 230 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 KCNJ2P63252 427 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 FOXK2Q01167 660 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 FGL2Q14314 439 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 ZNF805Q5CZA5 627 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 GDPD4Q6W3E5 623 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 ZYG11AQ6WRX3 759 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 ATG14Q6ZNE5 492 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 LDB1Q86U70 411 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-208ENST00000537004 HORMAD1Q86X24 394 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 FSTL5Q8N475 847 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-208ENST00000537004 PNPLA1Q8N8W4 532 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 STYXQ8WUJ0 223 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 SIKE1Q9BRV8 207 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 SAR1AQ9NR31 198 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 OXSMQ9NWU1 459 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-208ENST00000537004 HAO1Q9UJM8 370 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 BTBD3Q9Y2F9 522 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 SPO11Q9Y5K1 396 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 FADS3Q9Y5Q0 445 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CFAP47Q6ZTR5 3102 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CCDC162PA2VCL2 907 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CD3EAPO15446 510 aaKnown RBP11.81□□□□□ -0.52
CLIP1-208ENST00000537004 TRIM13O60858 407 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CBX6O95503 412 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CER1O95813 267 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 IGSF6O95976 241 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 PAK4O96013 591 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-208ENST00000537004 GOT2P00505 430 aaKnown RBP11.81□□□□□ -0.52
CLIP1-208ENST00000537004 PDHA1P08559 390 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CEACAM1P13688 526 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms